Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I22
         (484 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42822| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_5613| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.6  
SB_37419| Best HMM Match : Pox_A32 (HMM E-Value=0.24)                  27   6.1  
SB_47140| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07)                 27   8.1  
SB_12939| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_1297| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.1  
SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   8.1  

>SB_42822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 183 RTSRKSRGNICWRKTRTSTRNPMLLRNSWRPSKW 284
           R  + S   I WR    S+R+P L+R S   S W
Sbjct: 205 RIIKNSNYEILWRALGLSSRSPTLMRGSLTVSVW 238


>SB_5613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +3

Query: 156 TTYCSQLCTRTSRKSRGNICWRKTRTSTRNPMLLRNSWRPSKWACYRVVRSSFTQMRCK 332
           TT+   +CT T   ++ N+ W+   + TR+      +W   KW   R    +   M  K
Sbjct: 5   TTWRGNVCTHTRHGAKDNMAWKWMHSHTRHGAKDNMAW---KWMLSRTRHGAKDNMAWK 60


>SB_37419| Best HMM Match : Pox_A32 (HMM E-Value=0.24)
          Length = 1497

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 326  THLCERRPHHAVACPF*RSP*IS-*QHRISSTCPCFPPAYIP 204
            T L ERR  H V+C   RSP  S  Q R     P  P A+ P
Sbjct: 1275 TELTERRKRHFVSCNTLRSPVASEPQGREGLRAPKMPSAHTP 1316


>SB_47140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -1

Query: 286 AHFEGLHEFRNNIGFRVLVRVFLQHIFPRDFLDVLVHSW--LQYVVQEFH 143
           A F GLH +   +  R     FL+H F RD  D L+H    LQ   QE H
Sbjct: 151 AGFAGLHGYTAELMLRTENMTFLEHHF-RDLRDGLLHIGFSLQGRTQEKH 199


>SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07)
          Length = 1127

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 34/123 (27%), Positives = 55/123 (44%)
 Frame = -2

Query: 375  LAKYSMRKTSTACSICNAFV*TKTSPRGSMPILKVSMNFVTTSDFEYLSVFSSSIYSLAT 196
            L ++S+R T    +  N  + + T+   S+P L  S   +       L+  + SI SLAT
Sbjct: 869  LHEWSLRTTHITLTTSNESIPSLTTSNESIPALTTSNESIPA-----LTTTTESIPSLAT 923

Query: 195  SLMSSYTVGCST*FKSFMMQISFIFTSAFMRLSFPITTSKE*LASLTTDAVAAARNATRM 16
            S  S  ++  S         I  + TS   +   P+TTS E ++SLTT   +     TR 
Sbjct: 924  SNESIPSLTTSN------ESIPSLTTSN--KSIPPLTTSNESISSLTTSNESIPSLTTRN 975

Query: 15   STL 7
             ++
Sbjct: 976  ESI 978


>SB_12939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 575

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 11  VLILVAFLAAATASVVNDANYSF 79
           VLIL+AF A A  S+VN   Y F
Sbjct: 503 VLILLAFYALALGSIVNPVIYCF 525


>SB_1297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +3

Query: 156 TTYCSQLCTRTSRKSRGNICWRKTRTSTRNPMLLRNSWR 272
           TT+   +CT T   ++ N+ W+   + TR+      +W+
Sbjct: 5   TTWRGNVCTHTRHGAKDNMTWKWMHSHTRHGAKDNMAWK 43


>SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2229

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 74  SFDVVIGKDSLMKADVKMKEICIMKLLNYVLQPTVYEDIKEVAREYM 214
           S D V+GK   +       +  ++KLL Y+L+  + ++ K+ AR+ M
Sbjct: 250 SLDKVVGKALSVLLVCYAAQNNLLKLLKYLLEVPLVQEEKDAARQQM 296


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,572,272
Number of Sequences: 59808
Number of extensions: 328714
Number of successful extensions: 897
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)