Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I22
         (484 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30093-1|CAA82909.1|  303|Homo sapiens basic transcription facto...    29   8.6  
BC065250-1|AAH65250.1|  308|Homo sapiens general transcription f...    29   8.6  
BC047868-1|AAH47868.2|  303|Homo sapiens GTF2H3 protein protein.       29   8.6  
BC039726-1|AAH39726.1|  303|Homo sapiens GTF2H3 protein protein.       29   8.6  
BC031030-1|AAH31030.1|  235|Homo sapiens Unknown (protein for IM...    29   8.6  
AF548661-1|AAN40702.1|  308|Homo sapiens general transcription f...    29   8.6  

>Z30093-1|CAA82909.1|  303|Homo sapiens basic transcription factor
           2, 35 kD subunit protein.
          Length = 303

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = +2

Query: 200 AREYMLEENTDKYSKSDVVTKFMETFKMGMLPRGEVFVHTNALQMEQAVEV-FRILYF-- 370
           A E ++EE  D  +KSD+  +  ET   G L +   ++H    +++   E+  RIL    
Sbjct: 107 ANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKA 166

Query: 371 AKD*ELLHQNCLLV 412
           A+D  L + N + V
Sbjct: 167 AEDSALQYMNFMNV 180


>BC065250-1|AAH65250.1|  308|Homo sapiens general transcription
           factor IIH, polypeptide 3, 34kDa protein.
          Length = 308

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = +2

Query: 200 AREYMLEENTDKYSKSDVVTKFMETFKMGMLPRGEVFVHTNALQMEQAVEV-FRILYF-- 370
           A E ++EE  D  +KSD+  +  ET   G L +   ++H    +++   E+  RIL    
Sbjct: 107 ANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKA 166

Query: 371 AKD*ELLHQNCLLV 412
           A+D  L + N + V
Sbjct: 167 AEDSALQYMNFMNV 180


>BC047868-1|AAH47868.2|  303|Homo sapiens GTF2H3 protein protein.
          Length = 303

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = +2

Query: 200 AREYMLEENTDKYSKSDVVTKFMETFKMGMLPRGEVFVHTNALQMEQAVEV-FRILYF-- 370
           A E ++EE  D  +KSD+  +  ET   G L +   ++H    +++   E+  RIL    
Sbjct: 102 ANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKA 161

Query: 371 AKD*ELLHQNCLLV 412
           A+D  L + N + V
Sbjct: 162 AEDSALQYMNFMNV 175


>BC039726-1|AAH39726.1|  303|Homo sapiens GTF2H3 protein protein.
          Length = 303

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = +2

Query: 200 AREYMLEENTDKYSKSDVVTKFMETFKMGMLPRGEVFVHTNALQMEQAVEV-FRILYF-- 370
           A E ++EE  D  +KSD+  +  ET   G L +   ++H    +++   E+  RIL    
Sbjct: 102 ANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKA 161

Query: 371 AKD*ELLHQNCLLV 412
           A+D  L + N + V
Sbjct: 162 AEDSALQYMNFMNV 175


>BC031030-1|AAH31030.1|  235|Homo sapiens Unknown (protein for
           IMAGE:4724313) protein.
          Length = 235

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = +2

Query: 200 AREYMLEENTDKYSKSDVVTKFMETFKMGMLPRGEVFVHTNALQMEQAVEV-FRILYF-- 370
           A E ++EE  D  +KSD+  +  ET   G L +   ++H    +++   E+  RIL    
Sbjct: 34  ANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKA 93

Query: 371 AKD*ELLHQNCLLV 412
           A+D  L + N + V
Sbjct: 94  AEDSALQYMNFMNV 107


>AF548661-1|AAN40702.1|  308|Homo sapiens general transcription
           factor IIH, polypeptide 3, 34kDa protein.
          Length = 308

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = +2

Query: 200 AREYMLEENTDKYSKSDVVTKFMETFKMGMLPRGEVFVHTNALQMEQAVEV-FRILYF-- 370
           A E ++EE  D  +KSD+  +  ET   G L +   ++H    +++   E+  RIL    
Sbjct: 107 ANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKA 166

Query: 371 AKD*ELLHQNCLLV 412
           A+D  L + N + V
Sbjct: 167 AEDSALQYMNFMNV 180


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,685,810
Number of Sequences: 237096
Number of extensions: 1401145
Number of successful extensions: 6812
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6812
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4327667848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)