Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_I22
(484 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C) 38 0.005
At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) simi... 37 0.006
At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A) 33 0.10
At5g21222.1 68418.m02532 protein kinase family protein contains ... 28 2.9
At4g11030.1 68417.m01794 long-chain-fatty-acid--CoA ligase, puta... 28 3.8
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ... 28 3.8
At1g79540.1 68414.m09272 pentatricopeptide (PPR) repeat-containi... 28 3.8
At5g16680.1 68418.m01951 PHD finger family protein contains Pfam... 27 5.0
At4g23850.1 68417.m03429 long-chain-fatty-acid--CoA ligase / lon... 27 6.6
At1g79340.1 68414.m09246 latex-abundant protein, putative (AMC7)... 27 6.6
At1g77800.1 68414.m09059 PHD finger family protein contains Pfam... 27 6.6
At1g19570.1 68414.m02437 dehydroascorbate reductase, putative si... 27 6.6
At1g19550.1 68414.m02435 dehydroascorbate reductase, putative si... 27 6.6
At5g51660.1 68418.m06405 cleavage and polyadenylation specificit... 27 8.8
At5g21326.1 68418.m02534 protein kinase family protein / NAF dom... 27 8.8
At5g02830.1 68418.m00225 pentatricopeptide (PPR) repeat-containi... 27 8.8
At1g18260.1 68414.m02277 suppressor of lin-12-like protein-relat... 27 8.8
>At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)
Length = 135
Score = 37.5 bits (83), Expect = 0.005
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +2
Query: 86 VIGKDSLMKADVKMKEICIMKLLNYV-LQPTVYE---DIKEVAREYMLEENTDKYSK-SD 250
VI KDS K K + C +KL+NY L PT Y D+KEVA L+ K + +
Sbjct: 53 VIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKE 112
Query: 251 VVTKFMETFKMG 286
K E FK G
Sbjct: 113 AKAKLEERFKTG 124
>At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) similar
to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum
tuberosum]
Length = 135
Score = 37.1 bits (82), Expect = 0.006
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +2
Query: 86 VIGKDSLMKADVKMKEICIMKLLNYV-LQPTVYE---DIKEVAREYMLEENTDKYSK-SD 250
VI KDS K K + C +KL+NY L PT Y D+KEVA L+ K + +
Sbjct: 53 VIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKE 112
Query: 251 VVTKFMETFKMG 286
K E FK G
Sbjct: 113 AKAKLEERFKTG 124
>At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A)
Length = 135
Score = 33.1 bits (72), Expect = 0.10
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Frame = +2
Query: 86 VIGKDSLMKADVKMKEICIMKLLNYV-LQPTVYE---DIKEVAREYMLEENTDKYSK-SD 250
VI KDS K K + C K++NY + PT Y D+K V + K + +
Sbjct: 53 VIRKDSAKKTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKE 112
Query: 251 VVTKFMETFKMG 286
KF E FK G
Sbjct: 113 AKAKFEERFKTG 124
>At5g21222.1 68418.m02532 protein kinase family protein contains
Pfam profile: PF00069 protein kinase domain
Length = 831
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +2
Query: 83 VVIGKDSLMK---ADVKMKEICIMKLLNYVLQPTVYEDIKEVAREYMLEE 223
+++ KD ++K A+ +EI IMKL+N+ +YE + A+ Y++ E
Sbjct: 42 MILDKDKVLKHKMAEQIKREISIMKLINHPNVVQLYEVLASKAKIYIVLE 91
>At4g11030.1 68417.m01794 long-chain-fatty-acid--CoA ligase,
putative / long-chain acyl-CoA synthetase, putative
similar to acyl-CoA synthetase (MF7P) gi:1617270 from
Brassica napus
Length = 666
Score = 27.9 bits (59), Expect = 3.8
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -2
Query: 300 PRGSMPILKVSMNFVTTSDFEYLSVFS-SSIYSLATSLMSSYTVGCST*FKSFMMQIS 130
P GSM I+ N + EY++V + ++YS + S + G S F+SF++ I+
Sbjct: 508 PNGSMKIIDRKKNIFKLAQGEYVAVENLENVYSQVEVIESIWVYGNS--FESFLVAIA 563
>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
bromodomain-containing protein low similarity to
SP|P51123 Transcription initiation factor TFIID 230 kDa
subunit {Drosophila melanogaster}; contains Pfam
profiles: PF00439 bromodomain, PF00240: Ubiquitin family
Length = 1700
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/52 (23%), Positives = 22/52 (42%)
Frame = +3
Query: 171 QLCTRTSRKSRGNICWRKTRTSTRNPMLLRNSWRPSKWACYRVVRSSFTQMR 326
Q+C+ R + G CW K R + P+ L P Y + + +++
Sbjct: 783 QVCSDLERDANGKACWSKKRKFDKIPLGLNTLVAPEDVCSYESMLAGLFRLK 834
>At1g79540.1 68414.m09272 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 780
Score = 27.9 bits (59), Expect = 3.8
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +2
Query: 236 YSKSDVVTKFMETF-KMGMLP-RGEVFVHTNALQMEQAVEVFRILYFAKD*ELLHQNC 403
Y+K + K +E+F +M R +VF + L++ EVF +L FA E+L NC
Sbjct: 137 YAKMGMAEKAVESFGRMKEFDCRPDVFTYNVILRVMMREEVFFMLAFAVYNEMLKCNC 194
>At5g16680.1 68418.m01951 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1290
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 245 SDVVTKFMETFKMGMLPRGEVFVHTNALQMEQAVEVFRILYFAKD*ELLHQN 400
++VV KF ETF + +PR + T ++ + +FAKD E +N
Sbjct: 849 AEVVNKFPETFSLNEVPRKSTW-PTQFEKLGTKEAHIALFFFAKDTESYERN 899
>At4g23850.1 68417.m03429 long-chain-fatty-acid--CoA ligase /
long-chain acyl-CoA synthetase nearly identical to
acyl-CoA synthetase (MF7P) from Brassica napus
[gi:1617270]
Length = 666
Score = 27.1 bits (57), Expect = 6.6
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -2
Query: 300 PRGSMPILKVSMNFVTTSDFEYLSVFS-SSIYSLATSLMSSYTVGCST*FKSFMMQIS 130
P GSM I+ N S EY++V + +IY ++ S + G S F+SF++ I+
Sbjct: 508 PDGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNS--FESFLIAIA 563
>At1g79340.1 68414.m09246 latex-abundant protein, putative (AMC7) /
caspase family protein similar to latex-abundant protein
[Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
PF00656: ICE-like protease (caspase) p20 domain
Length = 418
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 187 HQGSREGIYAGGKHGQV 237
H GS+E +YAGG G V
Sbjct: 316 HVGSKEEVYAGGSRGSV 332
>At1g77800.1 68414.m09059 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1423
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/60 (25%), Positives = 33/60 (55%)
Frame = +2
Query: 161 VLQPTVYEDIKEVAREYMLEENTDKYSKSDVVTKFMETFKMGMLPRGEVFVHTNALQMEQ 340
++ P+V ED ++ +++ + ++K V+T +FK LP+G +V + LQ ++
Sbjct: 1338 IVSPSVSEDGDNGSKPK--KQHVETFAKELVMTSDEASFKNRRLPKGYFYVPVDCLQEDK 1395
>At1g19570.1 68414.m02437 dehydroascorbate reductase, putative
similar to GB:BAA90672 from (Oryza sativa)
Length = 213
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 303 SPRGSMPILKVSMNFVTTSD 244
SP+G +P+LK+ +VT SD
Sbjct: 55 SPQGKVPVLKIDDKWVTDSD 74
>At1g19550.1 68414.m02435 dehydroascorbate reductase, putative
similar to dehydroascorbate reductase [Arabidopsis
thaliana] gi|10952514|gb|AAG24946
Length = 153
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 303 SPRGSMPILKVSMNFVTTSD 244
SP+G +P+LK+ +VT SD
Sbjct: 19 SPQGKVPVLKIDDKWVTDSD 38
>At5g51660.1 68418.m06405 cleavage and polyadenylation specificity
factor (CPSF) A subunit C-terminal domain-containing
protein similar to SP|Q9EPU4 Cleavage and
polyadenylation specificity factor, 160 kDa subunit
(CPSF 160 kDa subunit) {Mus musculus}; contains Pfam
profile PF03178: CPSF A subunit region
Length = 1442
Score = 26.6 bits (56), Expect = 8.8
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +1
Query: 115 RCENEGDLHHETLELRTAANCVRGHQGSREGIYAGGKHGQVLEIRCCYEIHGDLQN 282
R + EG+ T ELR RG G +G+Y G LE+ C Y +HG++++
Sbjct: 74 RAQEEGN----TQELRNPKLAKRG--GVMDGVY-----GVSLELVCHYRLHGNVES 118
>At5g21326.1 68418.m02534 protein kinase family protein / NAF
domain-containing protein contains Pfam profiles:
PF00069 protein kinase domain, PF03822 NAF domain
Length = 439
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = +2
Query: 86 VIGKDSLMK---ADVKMKEICIMKLLNYVLQPTVYEDIKEVAREYMLEE 223
++ K+ ++K A+ +EIC MKL+N+ +YE + + Y++ E
Sbjct: 43 ILDKEKVLKHKMAEQIRREICTMKLINHPNVVRLYEVLASKTKIYIVLE 91
>At5g02830.1 68418.m00225 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 852
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 214 AGGKHGQVLEIRCCYEIHGDLQN 282
A K+G +LE+R C I+ D++N
Sbjct: 638 ARSKYGSLLEVRQCLAIYQDMRN 660
>At1g18260.1 68414.m02277 suppressor of lin-12-like protein-related
/ sel-1 protein-related similar to Sel-1 homolog
precursor (Suppressor of lin-12-like protein)
(Sel-1L)(SP:Q9UBV2) {Homo sapiens}
Length = 678
Score = 26.6 bits (56), Expect = 8.8
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -1
Query: 259 RNNIGFRVLVRVF--LQHIFPRDFLDVLVHSWLQYVVQEFHDADLLHFHICL 110
R N VLVRV L ++P+ V +W++ VV E +A +L +CL
Sbjct: 591 RRNYADTVLVRVVDSLPEVYPK------VETWIENVVFEEGNATILTLFVCL 636
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,023,345
Number of Sequences: 28952
Number of extensions: 209490
Number of successful extensions: 631
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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