Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I21
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.5  
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb...    26   3.5  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   3.5  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   6.2  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   6.2  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    25   8.1  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   8.1  

>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
 Frame = +1

Query: 40  GDCSDTYVY---VADVSGFGLLI 99
           GDCSDT VY   V+ +S FG LI
Sbjct: 340 GDCSDTLVYDVSVSPMSFFGSLI 362


>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 298

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 307 SVLRNRTYIE-NSELNSNDVRKFSGERPNQSAAEAMD 414
           +++  + Y++  +EL+ ND  KFS +R    A + MD
Sbjct: 230 TIMSKKEYVDMKAELHKNDPPKFSSKRRRFDAFKEMD 266


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 58  YVYVADVSGFGLLIVDVARNQSWR-VTHKYF 147
           Y  VA ++ FG L++ V  + +W+ + H+Y+
Sbjct: 597 YQLVAALTAFGALLLSVGGSLTWKIIKHQYY 627


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 10  PVVDVRPQTPGDCSDTYVYVADVSGFG 90
           P+  VRP+  G   D Y+ + +V G G
Sbjct: 196 PIESVRPEALGISDDDYIQIYEVFGDG 222


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 472 SSNSTYWVDPSNQKTFCR 419
           +S+ +Y V PSN  TFCR
Sbjct: 204 NSSFSYEVQPSNYTTFCR 221


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 267 EVKGTINSSSIGR*GHTENAIHKVERFTN 181
           E+ GT NS S+G  G   +   K+ +F+N
Sbjct: 27  EMNGTQNSMSVGMSGSGSSQNRKITQFSN 55


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/52 (23%), Positives = 19/52 (36%)
 Frame = -1

Query: 547  HRWRTEEFACLLQLHESFPVNILC*SSNSTYWVDPSNQKTFCRYSPSLPLQT 392
            H  +     CL ++H   P  +LC S +  +    S +         LP  T
Sbjct: 3982 HLHKNSRIVCLSEIHNQLPHQLLCISRSIVFNKQTSFKNNLLNLLELLPTMT 4033


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,749
Number of Sequences: 5004
Number of extensions: 55639
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)