Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I21
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1105 + 26128108-26129032,26129535-26129663,26129924-26131104     30   1.6  
02_05_0587 + 30162806-30163183,30163315-30163478,30163571-301636...    28   6.3  
11_01_0699 - 5757410-5757458,5757760-5757831,5758084-5758152,575...    27   8.3  
03_03_0277 + 16116017-16117424,16117461-16117660,16117739-161178...    27   8.3  

>12_02_1105 + 26128108-26129032,26129535-26129663,26129924-26131104
          Length = 744

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 118 QSWRVTHKYFYPYPSRGTFTIVG-ESFDLMDGIFGMTLSPYRAG 246
           + + + H  F P PSR  FT++G  +  L+ G  G T+S Y  G
Sbjct: 121 EGYELKHTPFLPSPSRNRFTVIGCNTLGLIGGYKG-TVSHYVTG 163


>02_05_0587 +
           30162806-30163183,30163315-30163478,30163571-30163654,
           30163737-30163794,30164092-30164145,30164244-30164309,
           30164310-30164381,30164547-30164627,30165361-30165533,
           30165916-30166018,30166148-30166279,30166432-30166554,
           30166898-30167002,30167397-30167722,30167919-30168258,
           30169973-30170113,30170589-30170801,30170901-30171119,
           30171272-30171619,30171711-30172043,30172548-30172601
          Length = 1188

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = -2

Query: 195 ERFTNNSESAP*RIRIEIFMSDSP*L--ITCDVYNEQTES 82
           E FT++   +  +IR+   +S+SP +  + CD+Y+  +ES
Sbjct: 788 ENFTSSDHPSIVQIRVSSVISNSPIIMNVDCDMYSNNSES 827


>11_01_0699 -
           5757410-5757458,5757760-5757831,5758084-5758152,
           5758329-5758477,5758568-5758699,5758784-5759109,
           5759330-5759399,5759684-5759738,5760322-5760377,
           5760500-5760700,5761466-5761651,5761756-5761906,
           5761978-5762206,5762321-5762582,5762858-5762959
          Length = 702

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 436 GLMDPPSMWSWNSNTE 483
           GL+DP  MW WN   E
Sbjct: 497 GLLDPIKMWDWNKGWE 512


>03_03_0277 +
           16116017-16117424,16117461-16117660,16117739-16117816,
           16118381-16118533,16118969-16119280,16119390-16119563,
           16120411-16120498,16120598-16120611
          Length = 808

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/17 (64%), Positives = 16/17 (94%)
 Frame = -3

Query: 209 PSIRSKDSPTIVKVPLE 159
           P+++SK SP+IVKVPL+
Sbjct: 217 PNVQSKLSPSIVKVPLK 233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,440,507
Number of Sequences: 37544
Number of extensions: 351952
Number of successful extensions: 793
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)