Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I21
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81143-3|CAB03519.2|  276|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z81119-6|CAB03337.2|  401|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U10414-4|AAW30666.1|  641|Caenorhabditis elegans Neurofibromatos...    27   7.4  
U10414-3|AAK68385.1|  709|Caenorhabditis elegans Neurofibromatos...    27   7.4  
U10414-2|AAA19073.1|  654|Caenorhabditis elegans Neurofibromatos...    27   7.4  
Z37092-4|CAA85455.1|  890|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z81143-3|CAB03519.2|  276|Caenorhabditis elegans Hypothetical
           protein ZK265.4 protein.
          Length = 276

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 19/73 (26%), Positives = 24/73 (32%), Gaps = 1/73 (1%)
 Frame = +1

Query: 268 HALASTTENVVRTSVLRNRTYIENSELNSNDVRK-FSGERPNQSAAEAMDCNGRMFFGLM 444
           HAL +  +      V    T     +L    V+  F   R      E  DC G     L 
Sbjct: 73  HALEAAFDKTHYPDVYARETLAAKVQLPEVRVQVWFQNRRAKFRRQEKQDCQGEEKHSLK 132

Query: 445 DPPSMWSWNSNTE 483
           D    WSW S  +
Sbjct: 133 DTMPSWSWMSENK 145


>Z81119-6|CAB03337.2|  401|Caenorhabditis elegans Hypothetical
           protein T10H4.8 protein.
          Length = 401

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 214 FGMTLSPYRAGIDRSLY-FHALASTTENVVRTSVLRNRTYIENSELNS 354
           F MTL  YR  +D+S Y +    + T +V+  SV  +  Y+   +L +
Sbjct: 182 FAMTLRRYRDVLDKSCYNYEEHLNHTNSVLVVSVYVSNIYVNRKQLET 229


>U10414-4|AAW30666.1|  641|Caenorhabditis elegans Neurofibromatosis
           homolog protein1, isoform c protein.
          Length = 641

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 460 WSWNSNTEYSPENFHAVAIDKQTLQFAS 543
           WS   N ++    FH   +DK T+ F S
Sbjct: 252 WSEIKNIQFKNRKFHMKTVDKSTISFRS 279


>U10414-3|AAK68385.1|  709|Caenorhabditis elegans Neurofibromatosis
           homolog protein1, isoform b protein.
          Length = 709

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 460 WSWNSNTEYSPENFHAVAIDKQTLQFAS 543
           WS   N ++    FH   +DK T+ F S
Sbjct: 252 WSEIKNIQFKNRKFHMKTVDKSTISFRS 279


>U10414-2|AAA19073.1|  654|Caenorhabditis elegans Neurofibromatosis
           homolog protein1, isoform a protein.
          Length = 654

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 460 WSWNSNTEYSPENFHAVAIDKQTLQFAS 543
           WS   N ++    FH   +DK T+ F S
Sbjct: 252 WSEIKNIQFKNRKFHMKTVDKSTISFRS 279


>Z37092-4|CAA85455.1|  890|Caenorhabditis elegans Hypothetical
           protein F44F4.4 protein.
          Length = 890

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +1

Query: 106 VARNQSWRVTHKYFYPYPSRGTFTIVGESFDLMDGIFGMTLSPYRAGIDRS----LYFHA 273
           + +NQ+  ++ +    YP+   F   G  F L+   FG+++SP    ++ S    LYF A
Sbjct: 154 LGKNQTDGISKRIDLSYPTSNFF---GRKFSLIPNFFGISMSPEGQHLNSSNLIVLYFRA 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,030,571
Number of Sequences: 27780
Number of extensions: 306048
Number of successful extensions: 707
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)