Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I21
         (586 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60700.1 68418.m07617 glycosyltransferase family protein 2 co...    28   5.3  
At3g52780.2 68416.m05816 purple acid phosphatase (PAP20) identic...    27   7.0  
At3g52780.1 68416.m05815 purple acid phosphatase (PAP20) identic...    27   7.0  
At3g57960.1 68416.m06460 emsy N terminus domain-containing prote...    27   9.2  
At1g71210.1 68414.m08217 pentatricopeptide (PPR) repeat-containi...    27   9.2  

>At5g60700.1 68418.m07617 glycosyltransferase family protein 2
           contains Pfam profile PF00535: glycosyl transferase,
           group 2 family protein
          Length = 668

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
 Frame = +1

Query: 1   FITPVVDVRPQTPGDCSDTYVYVADVSGFGLLIVDVARNQSWRV-----THKYFYPYPSR 165
           F+ PV     +T GD      YV++ +     IV+V  NQ W+        ++   YP +
Sbjct: 117 FVLPVDPNDKETWGDSEHRLAYVSETTVIFKNIVEVRDNQWWKALSTGYVTQWAAMYPQK 176

Query: 166 GTFTIVGESFDLMDGIFGMTLSPYRAGIDRSLY 264
                   S D +  + G  L  +R  + +  Y
Sbjct: 177 IDALFYAHSIDEVKAL-GPLLEKFRGTVGKKAY 208


>At3g52780.2 68416.m05816 purple acid phosphatase (PAP20) identical
           to purple acid phosphatase GI:20257491 from [Arabidopsis
           thaliana]
          Length = 361

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 37  PGDCSDTYVYVADVSGFGLLIVDVARNQSWRVTH 138
           PGD S   +Y      FG L+  +A  + W VTH
Sbjct: 172 PGDLSYANMYQPLWDTFGRLVQPLASQRPWMVTH 205


>At3g52780.1 68416.m05815 purple acid phosphatase (PAP20) identical
           to purple acid phosphatase GI:20257491 from [Arabidopsis
           thaliana]
          Length = 427

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 37  PGDCSDTYVYVADVSGFGLLIVDVARNQSWRVTH 138
           PGD S   +Y      FG L+  +A  + W VTH
Sbjct: 172 PGDLSYANMYQPLWDTFGRLVQPLASQRPWMVTH 205


>At3g57960.1 68416.m06460 emsy N terminus domain-containing protein
           / ENT domain-containing protein contains Pfam profile
           PF03735: ENT domain
          Length = 223

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +1

Query: 250 DRSLYFHALASTTENVVRTSVLRNRTYIENSELNSNDVRKFSGERPNQSA 399
           D     H+L + T N +    +    +I+  +++ ND+    G++PN +A
Sbjct: 164 DAEKEMHSLLTETSNPMEVDCIDPFRWIDIRDISPNDIMWEGGQKPNFAA 213


>At1g71210.1 68414.m08217 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 879

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 181 VGESFDLMDGIFGMTLSPYRAGIDRSLYFH 270
           V +S  L+D IF +  +P   G DR+ Y H
Sbjct: 73  VKQSHQLIDRIFDILRAPSNDGDDRAFYLH 102


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,307,537
Number of Sequences: 28952
Number of extensions: 288968
Number of successful extensions: 662
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)