Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I20
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl...    27   1.8  
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch...    26   3.1  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   5.4  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   5.4  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    25   7.2  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    25   7.2  
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    25   7.2  

>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
           endonuclease Cce1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 258

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +2

Query: 164 SIHSTERRPLFDKGLSPKILLRLSPGHRFTLWSSPAQAESSCTR 295
           ++H  E+R   ++ +    LL LSP   ++ W+S    ++S ++
Sbjct: 144 ALHYAEKRNSIEQKIQYPFLLSLSPKSTYSYWASVLNTKASFSK 187


>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 157 IPIYPFNRKTSTF*QRSLPKDPPATFTRTSFHLVELTGSS*VFLYA 294
           I +   N+KT  F   +L +     FT+TSF+L +L G +    YA
Sbjct: 388 IMVASHNKKTM-FESVNLAETKKVDFTKTSFYLAQLLGMADDITYA 432


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 415  YNSIILNIFIPNNIYLPLPYSNIVNKKIV*FLPSFSIVLQT 537
            YN+ +L+ F   ++ + +  +N+   +I   L  FS+VL T
Sbjct: 1586 YNAYLLDFFTHGSVDMLIEQNNLKQSEIWFVLNDFSLVLAT 1626


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 309 SHRASVLPAMGWHCHLRKYANAILLHTNVVPCFLP 413
           S    ++P +   CH+R Y +AIL   +V   FLP
Sbjct: 344 SFNHQMIPHVSQFCHVRSYLSAIL--PSVCRIFLP 376


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 127 NFSPSGYSRVIPIYPFNRKTSTF*QRSLPKDPPAT 231
           N+  S Y  +IP Y       +  Q S+P   P+T
Sbjct: 404 NYPDSFYRNIIPYYSGKETKQSHNQLSIPSSTPST 438


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 162 HLSIQPKDVHFLTKVSPQRSSCDFHQDIVSPC 257
           HL ++P DV    K+  Q  SC F     S C
Sbjct: 10  HLKLKPADVENYQKICTQIFSCHFVPRRCSTC 41


>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 242 VLVKVAGGSLGRDLCQKVDVFRLNG 168
           +L +VAG S G DL  K+    +NG
Sbjct: 221 LLEEVAGNSKGPDLANKLGTVEING 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,388,196
Number of Sequences: 5004
Number of extensions: 51787
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)