Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I20
         (541 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0136 - 21074420-21074746,21075905-21077026                       29   3.1  
03_05_0984 + 29422139-29422282,29422386-29422488,29422650-294227...    28   4.1  
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749...    28   4.1  
01_06_0561 + 30251547-30252173,30252248-30252405,30253250-302541...    27   7.2  
03_04_0038 - 16718024-16718368,16718455-16719339                       27   9.6  
02_05_1028 + 33609111-33609316,33610849-33610912                       27   9.6  

>09_06_0136 - 21074420-21074746,21075905-21077026
          Length = 482

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +2

Query: 245 RFTLWSSPAQAESSCTRLLFEKPSSIGSTSNGLALPLKK 361
           RF   +SPA+AE  C   + E     GS  NG A+PLK+
Sbjct: 238 RFVYDASPAEAERHCG--VGELLEVCGSIINGFAVPLKE 274


>03_05_0984 +
           29422139-29422282,29422386-29422488,29422650-29422738,
           29423635-29423746,29423992-29424182
          Length = 212

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 260 SSPAQAESSCTRLLFEKPSSIGSTSNGL 343
           ++ ++AESS T +L  KPSS  +TS  L
Sbjct: 58  AASSEAESSLTDILVRKPSSSSATSGNL 85


>02_05_1052 +
           33770355-33773981,33774217-33774336,33774880-33774996,
           33775322-33775411,33775971-33776078,33776304-33776351
          Length = 1369

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 173 STERRPLFDKGLSPKILLRLSPGHRFTLWSSPAQAESS 286
           STERRP     LSP      +P  R +  +SP+ A SS
Sbjct: 78  STERRPATPSRLSPGGSRAAAPSSRISAPTSPSSAPSS 115


>01_06_0561 +
           30251547-30252173,30252248-30252405,30253250-30254192,
           30254271-30254438,30254546-30254857,30255498-30255557,
           30255905-30255937,30256083-30256271
          Length = 829

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 225 CDFHQDIVSPCGAHRLKLSLLVRDSYSRSHRAS 323
           CD H  +V    ++R KLS +  +SY +SH AS
Sbjct: 538 CDIHYPVVEM--SNRSKLSCICWNSYMKSHIAS 568


>03_04_0038 - 16718024-16718368,16718455-16719339
          Length = 409

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 121 FENFSPSGYSRVIPIYPFNRKTSTF*QRSLPKDPPATFTRTSFH 252
           F N +   YS ++P+ PFN       + +L K  P    R S H
Sbjct: 270 FSNATVVSYSHLLPVVPFNAFNPPPPEFALMKSDPPVVQRRSPH 313


>02_05_1028 + 33609111-33609316,33610849-33610912
          Length = 89

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 171 IQPKDVHFLTKVSPQRSSCDFHQDIV--SPCGAHRLKLSLLVRDSYS 305
           IQP  VH LT+  P  SS  +  +I+  S   A++     L+ + Y+
Sbjct: 21  IQPVQVHLLTRSEPSSSSTTWSIEIIQASSSAAYQKMSDRLISNEYA 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,864,696
Number of Sequences: 37544
Number of extensions: 310299
Number of successful extensions: 649
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)