Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_I20
(541 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50054| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019) 29 3.2
SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_25366| Best HMM Match : Tctex-1 (HMM E-Value=2.6e-08) 28 5.6
SB_22043| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_51883| Best HMM Match : Extensin_2 (HMM E-Value=1.3) 28 5.6
SB_3795| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_33923| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_13337| Best HMM Match : DUF385 (HMM E-Value=4.7) 27 7.4
SB_2229| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-25) 27 7.4
SB_740| Best HMM Match : DUF1131 (HMM E-Value=4.8) 27 7.4
SB_46764| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_20796| Best HMM Match : RVT_1 (HMM E-Value=0.047) 27 7.4
SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_17403| Best HMM Match : I-set (HMM E-Value=0) 27 9.8
>SB_50054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 937
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +3
Query: 195 LTKVSPQRSSCDFHQDIVSPCGAHRLKLSLLVRDSYSRSHRASVLP 332
+T++ P R+ Q P AH L +++L+ DS SR+H LP
Sbjct: 299 VTQLIPVRAEMLLGQRSSKPRSAHALNVNILLLDSVSRAHFYRSLP 344
>SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019)
Length = 448
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/65 (26%), Positives = 25/65 (38%)
Frame = +1
Query: 58 CMVVGYKWYYLIPVSISIDIRFENFSPSGYSRVIPIYPFNRKTSTF*QRSLPKDPPATFT 237
C V +Y L P S+++ F +P S + YP N K + P +P
Sbjct: 209 CDSVEVTFYPLNPKCDSVEVTFYPLNPKCDSVEVHFYPLNPKCDSVEVHFHPSNPKCDSV 268
Query: 238 RTSFH 252
FH
Sbjct: 269 EVHFH 273
>SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2209
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 322 RFYQQWAGIAT*ENMLTPFYSIQT*FPVSSLYNSIILNIFIPNNIYLPLPY 474
RF+ + + + EN P T ++SL+N ++F P+ + PLPY
Sbjct: 1427 RFWNHMS-VGSAENSTQPARLASTPASIASLFNGYFSSVFGPSALAHPLPY 1476
>SB_25366| Best HMM Match : Tctex-1 (HMM E-Value=2.6e-08)
Length = 556
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 55 YCMVVGYKWYYLIPVSISIDIRFENFSPSGY 147
YC++ GYK + LIP + I F + PS Y
Sbjct: 165 YCVISGYKKFTLIPPTDLPFIPFVLYKPSKY 195
>SB_22043| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 204 VSPQRSSCDFHQDIVSPCGAHRLKLSLLVRDSYSRSHRASVLPAMGWH 347
VSP C +VSP HR ++++V S+ H +V+ + W+
Sbjct: 2 VSPSWYHCHGITVMVSPSWYHRHGITVMVSPSWYHRHGITVMVSPSWY 49
>SB_51883| Best HMM Match : Extensin_2 (HMM E-Value=1.3)
Length = 295
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 243 IVSPCGAHRLKLSLLVRDSYSRSHRASVLPAMGW-HCH 353
+VSP HR ++++V S+ H + + + W HCH
Sbjct: 243 MVSPSWYHRHGITVMVSPSWYHRHGITFMVSPSWYHCH 280
>SB_3795| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 360 KYANAILLHTNVVPCFLPI*QHYFKYFYTK*YISTIAIL 476
++ + + LHTN + CFL H F +Y + +I + L
Sbjct: 373 QHGSTLTLHTNRICCFLLSLSHEFSSYYGRVHILVVKSL 411
>SB_33923| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 240 PGESRRRIFGERPLSKSGRLSVEWIDGNNS 151
P +S + +PL+ SGR+++E DG +S
Sbjct: 32 PTQSYAWLHNGKPLNASGRITIETFDGKSS 61
>SB_13337| Best HMM Match : DUF385 (HMM E-Value=4.7)
Length = 172
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +3
Query: 168 SIQPKDVHFLTKVSPQRSSCDFHQDIVSPCGAHRLKLSLLVRDSYSRSHRASVL 329
+IQP + F P S + +V C H + S++VRD ++ +VL
Sbjct: 46 AIQPTEWEFSEACHPYTSGRPRRRRLVGKCARHGDESSIVVRDCEKAAYLTNVL 99
>SB_2229| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-25)
Length = 419
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 321 SVLPAMGWHCHLRKYANAILLHTNVVPC-FLPI*QHYFKYFYTK*YIS 461
++LPA+ WH ++ N + + + C LP + Y + + Y+S
Sbjct: 174 ALLPALAWHGEVKSLVNKVYIFITFIVCAILPF--FFIMYAHVRIYMS 219
>SB_740| Best HMM Match : DUF1131 (HMM E-Value=4.8)
Length = 638
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 266 PAQAESSCTRLLFEKPSSIGSTSNG-LALPLK 358
P QAE C + PSS G S+G LA P K
Sbjct: 436 PLQAEEECRAECWHTPSSRGRMSSGMLAYPFK 467
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 266 PAQAESSCTRLLFEKPSSIGSTSNG-LALPLK 358
P QAE C + PSS G S+G LA P K
Sbjct: 479 PLQAEEECRAECWHTPSSRGRMSSGMLAYPFK 510
>SB_46764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 266 PAQAESSCTRLLFEKPSSIGSTSNG-LALPLK 358
P QAE C + PSS G S+G LA P K
Sbjct: 195 PLQAEEECRAECWHTPSSRGRMSSGMLAYPFK 226
>SB_20796| Best HMM Match : RVT_1 (HMM E-Value=0.047)
Length = 660
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 358 ENMLTPFYSIQT*FPVSSLYNSIILNIFIPNNIYLPLPY 474
EN P T ++SL+N ++F P+ + PLPY
Sbjct: 349 ENSTQPARLASTPASIASLFNGYFSSVFGPSALAHPLPY 387
>SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1390
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 7/40 (17%)
Frame = -3
Query: 485 TMFEYGNGR-------YILFGIKIFKIMLLYREETGNYVC 387
TMF Y G+ Y F KIM L +E+TG Y+C
Sbjct: 739 TMFWYSRGKDLTNRNKYTHFNNGSLKIMNLEKEDTGKYMC 778
>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4232
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 461 RYILFGIKIFKIMLLYREETGNYVCME*NGVS 366
RY++ KI L RE+ G+Y+C N VS
Sbjct: 1274 RYLVEPSNTLKIENLTREDEGSYICHAFNNVS 1305
>SB_17403| Best HMM Match : I-set (HMM E-Value=0)
Length = 671
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 470 GNGRYILFGIKIFKIMLLYREETGNYVCME*NGV 369
GNG + G+ + +I +R ETG + C NGV
Sbjct: 451 GNGSLVTSGMTL-QITAAHRRETGTFRCTADNGV 483
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,147,558
Number of Sequences: 59808
Number of extensions: 360243
Number of successful extensions: 748
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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