Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I20
         (541 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58754-8|AAK72082.1|  325|Caenorhabditis elegans Serpentine rece...    28   4.9  
Z66494-12|CAE17686.1| 1007|Caenorhabditis elegans Hypothetical p...    27   6.5  
Z66494-11|CAA91265.2| 1048|Caenorhabditis elegans Hypothetical p...    27   6.5  
Z54284-8|CAE17775.1| 1007|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z54284-7|CAA91065.2| 1048|Caenorhabditis elegans Hypothetical pr...    27   6.5  
L23651-1|AAA27964.3|  610|Caenorhabditis elegans Temporarily ass...    27   8.6  

>U58754-8|AAK72082.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 13 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 232 FTRTSFHLVELTGSS*VFLYATPIREAIEHRFYQ 333
           FT +SF L+ L      F++ TP R  I H F++
Sbjct: 269 FTFSSFLLIPLLSPLASFIFVTPYRRFIMHYFFK 302


>Z66494-12|CAE17686.1| 1007|Caenorhabditis elegans Hypothetical
           protein D2085.5b protein.
          Length = 1007

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = +2

Query: 128 TFHRAAIAELFPSIHSTERRPLFDKGLSPKILLRLSPGHRFTLWSSPAQAESSCTRLLFE 307
           T    AIAE     +S   R  FD+     +  R+ P  R    S P    SS   +L++
Sbjct: 572 TTETEAIAEEMKQQNSQNGRSFFDESRRNNVFERMRPEERIVAPSKPLDTCSSIRMMLYD 631


>Z66494-11|CAA91265.2| 1048|Caenorhabditis elegans Hypothetical
           protein D2085.5a protein.
          Length = 1048

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = +2

Query: 128 TFHRAAIAELFPSIHSTERRPLFDKGLSPKILLRLSPGHRFTLWSSPAQAESSCTRLLFE 307
           T    AIAE     +S   R  FD+     +  R+ P  R    S P    SS   +L++
Sbjct: 613 TTETEAIAEEMKQQNSQNGRSFFDESRRNNVFERMRPEERIVAPSKPLDTCSSIRMMLYD 672


>Z54284-8|CAE17775.1| 1007|Caenorhabditis elegans Hypothetical
           protein D2085.5b protein.
          Length = 1007

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = +2

Query: 128 TFHRAAIAELFPSIHSTERRPLFDKGLSPKILLRLSPGHRFTLWSSPAQAESSCTRLLFE 307
           T    AIAE     +S   R  FD+     +  R+ P  R    S P    SS   +L++
Sbjct: 572 TTETEAIAEEMKQQNSQNGRSFFDESRRNNVFERMRPEERIVAPSKPLDTCSSIRMMLYD 631


>Z54284-7|CAA91065.2| 1048|Caenorhabditis elegans Hypothetical
           protein D2085.5a protein.
          Length = 1048

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = +2

Query: 128 TFHRAAIAELFPSIHSTERRPLFDKGLSPKILLRLSPGHRFTLWSSPAQAESSCTRLLFE 307
           T    AIAE     +S   R  FD+     +  R+ P  R    S P    SS   +L++
Sbjct: 613 TTETEAIAEEMKQQNSQNGRSFFDESRRNNVFERMRPEERIVAPSKPLDTCSSIRMMLYD 672


>L23651-1|AAA27964.3|  610|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 250, isoform a protein.
          Length = 610

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 212 PKILLRLSPGHRFTLWSSPAQAESSCTRLLFEKPSSI 322
           P  ++RLS   + T   +PA A +S    LF+KP++I
Sbjct: 342 PSGVVRLSTPTKTTSPITPASASTSSLTCLFDKPATI 378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,998,437
Number of Sequences: 27780
Number of extensions: 278474
Number of successful extensions: 676
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)