Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I20
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.0  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   8.1  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   8.1  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   8.1  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   8.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.1  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 409 SLYNSIILNIFIPNNIY 459
           SL   I+L IFIP NIY
Sbjct: 406 SLVYIIMLIIFIPRNIY 422


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +1

Query: 52  NYCMVVGYKWYYLIPVSISIDIRFENFSP 138
           N C  + Y   Y+  + I + + + NF P
Sbjct: 102 NNCKKLYYNINYIEQIPIPVPVYYGNFPP 130


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +1

Query: 52  NYCMVVGYKWYYLIPVSISIDIRFENFSP 138
           N C  + Y   Y+  + I + + + NF P
Sbjct: 107 NNCKKLYYNINYIEQIPIPVPVYYGNFPP 135


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +1

Query: 52  NYCMVVGYKWYYLIPVSISIDIRFENFSP 138
           N C  + Y   Y+  + I + + + NF P
Sbjct: 107 NNCKKLYYNINYIEQIPIPVPVYYGNFPP 135


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +1

Query: 52  NYCMVVGYKWYYLIPVSISIDIRFENFSP 138
           N C  + Y   Y+  + I + + + NF P
Sbjct: 107 NNCKKLYYNINYIEQIPIPVPVYYGNFPP 135


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 254 LWSSPAQAESSCT 292
           LW  PA  +SSCT
Sbjct: 140 LWVPPAIYQSSCT 152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,290
Number of Sequences: 438
Number of extensions: 4034
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)