Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I20
         (541 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43610.1 68418.m05331 sucrose transporter-related / sucrose-p...    28   3.5  
At3g02580.1 68416.m00249 delta 7-sterol-C5-desaturase (STE1) ide...    28   3.5  
At5g06170.1 68418.m00688 sucrose transporter, putative / sucrose...    28   4.6  
At2g14670.1 68415.m01650 sucrose transporter, putative / sucrose...    28   4.6  
At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase f...    27   6.1  
At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase f...    27   6.1  
At1g66570.1 68414.m07564 sucrose transporter, putative / sucrose...    27   6.1  
At5g01530.1 68418.m00068 chlorophyll A-B binding protein CP29 (L...    27   8.0  
At3g52250.1 68416.m05742 myb family transcription factor contain...    27   8.0  
At3g48520.1 68416.m05296 cytochrome P450 family protein similar ...    27   8.0  

>At5g43610.1 68418.m05331 sucrose transporter-related /
           sucrose-proton symporter-related similar to
           sucrose-proton symporter SUC1 [Arabidopsis thaliana]
           GI:407094, sucrose transporter [Arabidopsis thaliana]
           GI:12057172; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 492

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -2

Query: 396 LRLYGV--KWR*HIFLSGNASPLLVEPMLDGFSNRSR 292
           ++L GV  KW   I+L G  S LLV+P +  FS+R +
Sbjct: 58  VQLLGVPHKWSSFIWLCGPVSGLLVQPSVGYFSDRCK 94


>At3g02580.1 68416.m00249 delta 7-sterol-C5-desaturase (STE1)
           identical to sterol-C5-desaturase GB:AAD12944 GI:4234768
           from [Arabidopsis thaliana]
          Length = 281

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 406 SSLYNSIILNIFIPNNIYLPLPY 474
           +S YN I+L+  +P N++ PLP+
Sbjct: 15  TSFYNRIVLSHLLPANLWEPLPH 37


>At5g06170.1 68418.m00688 sucrose transporter, putative /
           sucrose-proton symporter, putative similar to
           sucrose-proton symporter SUC1 [Arabidopsis thaliana]
           GI:407094, sucrose transporter [Arabidopsis thaliana]
           GI:12057172; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 491

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -2

Query: 396 LRLYGV--KWR*HIFLSGNASPLLVEPMLDGFSNRSR 292
           ++L GV  KW   I+L G  S LLV+P +  FS+R +
Sbjct: 58  VQLLGVPHKWSSFIWLCGPISGLLVQPTVGYFSDRCK 94


>At2g14670.1 68415.m01650 sucrose transporter, putative /
           sucrose-proton symporter, putative similar to
           sucrose-proton symporter SUC1 [Arabidopsis thaliana]
           GI:407094, SUC2 [Arabidopsis thaliana] GI:407092,
           sucrose transporter [Arabidopsis thaliana] GI:12057172;
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 492

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -2

Query: 396 LRLYGV--KWR*HIFLSGNASPLLVEPMLDGFSNR 298
           ++L GV  KW   I+L G  S LLV+P +  FS+R
Sbjct: 58  VQLLGVPHKWSSFIWLCGPVSGLLVQPSVGYFSDR 92


>At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase
           family protein similar to ubiquitin-specific protease
           UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
           profile PF00443: Ubiquitin carboxyl-terminal hydrolase
          Length = 910

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 373 PFYSIQT*FPVSSLYNSIILNIFIPNNIYLPLPYSNIVNK 492
           PF  +    P S+L  S+ + +F  +  +LP+PY+ IV K
Sbjct: 473 PFMYLSVPLP-STLTRSMTVTVFYCDGSHLPMPYTVIVPK 511


>At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase
           family protein similar to ubiquitin-specific protease
           UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
           profile PF00443: Ubiquitin carboxyl-terminal hydrolase
          Length = 910

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 373 PFYSIQT*FPVSSLYNSIILNIFIPNNIYLPLPYSNIVNK 492
           PF  +    P S+L  S+ + +F  +  +LP+PY+ IV K
Sbjct: 473 PFMYLSVPLP-STLTRSMTVTVFYCDGSHLPMPYTVIVPK 511


>At1g66570.1 68414.m07564 sucrose transporter, putative /
           sucrose-proton symporter, putative similar to
           sucrose-proton symporter SUC1 [Arabidopsis thaliana]
           GI:407094, sucrose transporter [Arabidopsis thaliana]
           GI:12057172; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 491

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -2

Query: 396 LRLYGV--KWR*HIFLSGNASPLLVEPMLDGFSNR 298
           ++L GV  KW   I+L G  S LLV+P +  FS+R
Sbjct: 57  VQLLGVPHKWPSFIWLCGPVSGLLVQPSVGYFSDR 91


>At5g01530.1 68418.m00068 chlorophyll A-B binding protein CP29
           (LHCB4) identical to CP29 [Arabidopsis thaliana]
           GI:298036; contains Pfam profile: PF00504 chlorophyll
           A-B binding protein
          Length = 290

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 255 KVKRCPGESRRR-IFGERPLSKSGRLSVEWIDGN 157
           K K  P +S ++ +  +RPL   G +S +W+DG+
Sbjct: 38  KKKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGS 71


>At3g52250.1 68416.m05742 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 1677

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 209 SPKILLRLSPGHRFT--LWSSPAQAESSCTRLLFEKPSSIGSTSNGLALPLKK 361
           +P   L++   H+F+    S P+   S C  L FE+PSS  +  N +  P K+
Sbjct: 200 TPVRSLKIKNEHKFSDQRLSLPSDPHSECISL-FERPSSENNYGNKVCSPAKQ 251


>At3g48520.1 68416.m05296 cytochrome P450 family protein similar to
           Cytochrome P450 94A1  (P450-dependent fatty acid
           omega-hydroxylase) (SP:O81117) {Vicia sativa}; contains
           Pfam profile: PF00067 cytochrome P450
          Length = 506

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 103 SKRVLDNTTYSQPPYNSLIKMFTFTKSSETL 11
           +K+V +NTTY  P Y  +  + +F K+   L
Sbjct: 25  TKKVQENTTYGPPSYPLIGSILSFNKNRHRL 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,217,086
Number of Sequences: 28952
Number of extensions: 258733
Number of successful extensions: 563
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)