Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I19
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    28   0.83 
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   1.5  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   1.9  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    27   2.5  
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           26   3.4  
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    26   4.4  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    25   5.9  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    25   7.7  

>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
 Frame = +3

Query: 105 NFNDVKPASLCNEIRQPVGQCQNIHISTNCYYGYHGP--KTANNIQHNTDCEMVEAPCTN 278
           N  D++ A+LC     P    ++   S    +  + P  +   +  H+++C  V    T 
Sbjct: 458 NSYDLQNANLCAPEMSPTYTARHRSNSAGSRFDAYEPIPQLYTHFSHSSECLSVNQD-TE 516

Query: 279 GSGTLQAGSRKRSADNSDYPQSKRIREDDSSIWSLVGTRSSPSHSASA 422
             G ++  + K    ++DY   +  R    S+ SLVG +S  S S+ A
Sbjct: 517 LLGKIENDNSK----SNDYLSVRNTRPRSRSLNSLVGNKSENSSSSKA 560


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 333  YPQSKRIREDDSSIWSLVGT 392
            Y   +RIR + SSIWSL+GT
Sbjct: 1202 YYNMRRIRMEWSSIWSLLGT 1221


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 321  QRSASANPLVMYRSRWYMVPLPSRNLCCVEY 229
            QR  S    +MYR +      P  NLCC+++
Sbjct: 1142 QRRTSPRQQIMYRIQTETAFGPDENLCCIDW 1172


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 94  ILETISTMSSLLRFAMKYAN-QWVNARTYIYQQIVTTDIMDLKQQTIFNTTQIARW 258
           +L + +  S L+R    Y   Q +N+   +Y+Q + T+  ++  +TI     +ARW
Sbjct: 467 LLGSQTNSSILVRLGNLYEELQDLNSAASMYKQCIKTEETEISPETIKARIWLARW 522


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 567 TVYKIISQNNSIEYSFLTIK 508
           ++YK+I  NN + YSF+ ++
Sbjct: 216 SIYKVIDGNNGLPYSFVQLR 235


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 279 GSGTLQAGSRKRSADNSDYPQSKRIREDDSSIWSLVGTRSSPSHS 413
           G  +LQ+ SRKR  D  D+P +K ++ +++     +  + SP+ S
Sbjct: 17  GVDSLQS-SRKRKNDFDDFPLNKGLKTNNNDYSGSIEPKFSPALS 60


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = +3

Query: 207 HGPKTANNIQHNTDCEMVEAPCTNGSGTLQAGSRKRSADNSDYPQSKRIREDDSSI 374
           H P  +N + HN   + +++   + S    + S  ++ DNS        + DD SI
Sbjct: 158 HCPACSNLVPHNQINQHLDSCLNSPSSPSSSSSPYKNKDNSKSNSLLSFKTDDDSI 213


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -1

Query: 357 LVYACF-VDNRCYQRSASANPLVMYRSRWYMVPLPSRNLCCVEYCLLF 217
           L   CF +  +   R +SA PL+ +      +   SRNL    +C+LF
Sbjct: 359 LYIGCFHMHTQVLNRMSSALPLLYWSMAHATLYAKSRNLKAFGHCILF 406


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,373,309
Number of Sequences: 5004
Number of extensions: 51856
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)