Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I19
         (567 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0739 - 21096684-21096742,21096822-21097076,21097206-210984...    30   1.1  
07_03_0748 - 21191457-21191509,21191845-21192099,21192198-211935...    29   2.6  
06_02_0097 + 11710560-11710859,11712605-11713270                       29   2.6  
06_01_0449 - 3176135-3176329,3176531-3177289,3177420-3177905,317...    28   4.5  
04_03_0083 + 10878487-10878714,10878781-10879223,10879267-108794...    28   4.5  
07_03_1604 - 28089032-28089079,28089161-28089371,28089484-280898...    27   7.9  
02_01_0091 + 646299-649082                                             27   7.9  

>07_03_0739 -
           21096684-21096742,21096822-21097076,21097206-21098498,
           21098616-21098688
          Length = 559

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
 Frame = -1

Query: 411 NGLGLTVCQQDSIW--KNHPLVYACFVDNRCYQRSASANPLVMYRSRWYMVPLPSRNLC- 241
           NG   +  QQ  +    N  + +A +  N  YQR+  A+    +    Y+V  PS ++C 
Sbjct: 400 NGADCSAIQQGKVCYEPNTMVAHASYAFNDYYQRNGKASSACNFAGAAYIVYKPSPSICD 459

Query: 240 -CVEYCLL-F*VHDIRSNNLLIYVCS 169
               +C+    V D+R    L Y CS
Sbjct: 460 PNPSWCVANAEVGDMRLQAALDYACS 485


>07_03_0748 -
           21191457-21191509,21191845-21192099,21192198-21193502,
           21194160-21194232
          Length = 561

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
 Frame = -1

Query: 411 NGLGLTVCQQDS--IWKNHPLVYACFVDNRCYQRSASANPLVMYRSRWYMVPLPSRNLC- 241
           NG   +  QQ       N  + +A F  N  YQR   AN    +    Y+V  PS ++C 
Sbjct: 404 NGADCSAIQQGKPCFEPNTMVAHASFAFNDYYQRMGQANGTCDFAGAAYIVFQPSESICD 463

Query: 240 -CVEYCLLF-*VHDIRSNNLLIYVC 172
               +C+    V D+R    L Y C
Sbjct: 464 PNPSWCIANPAVGDMRLQAALDYAC 488


>06_02_0097 + 11710560-11710859,11712605-11713270
          Length = 321

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 10/64 (15%)
 Frame = +3

Query: 114 DVKPASLCNE-IRQPVGQCQNIHI---------STNCYYGYHGPKTANNIQHNTDCEMVE 263
           DV   S+C E +R P+ QCQN H+         S  C+      K A NI      E ++
Sbjct: 83  DVLDCSICFESLRPPLYQCQNGHVACFSCWSKLSNKCHICSRDAKFARNIALEKIVESIK 142

Query: 264 APCT 275
           + C+
Sbjct: 143 SSCS 146


>06_01_0449 -
           3176135-3176329,3176531-3177289,3177420-3177905,
           3178302-3178421,3178637-3178703,3178784-3179007,
           3179149-3179234,3179936-3180509
          Length = 836

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
 Frame = +3

Query: 342 SKRIREDDSS-IWSLV-----GTRSSPSHSASAFNVNTPKYYTMC 458
           S+R R D S  +W++V        SSPS S SA + N+P  Y +C
Sbjct: 724 SRRCRPDLSGEVWAIVEAIRDAALSSPSSSRSAQDQNSPPSYFIC 768


>04_03_0083 +
           10878487-10878714,10878781-10879223,10879267-10879423,
           10879573-10880433
          Length = 562

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 261 EAPCTNGSGTLQAGSRKRSADNSDYPQSKRIRED 362
           + P +N +GT QAG   RSA  ++  +++ ++ D
Sbjct: 326 DPPYSNIAGTRQAGKEARSASTTELEENEEVQPD 359


>07_03_1604 -
           28089032-28089079,28089161-28089371,28089484-28089853,
           28090034-28090199
          Length = 264

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 324 YQRSASANPLVMYRSRWYMVPLPSRNLC 241
           + R  S+ PL    S W+M PLP  + C
Sbjct: 21  FDRVTSSPPLFSIISSWWMNPLPQHSSC 48


>02_01_0091 + 646299-649082
          Length = 927

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 363 DSSIWSLVGTRSSPSHSASAFNVNTPKY 446
           DS +W  +G    PSHS S   +   +Y
Sbjct: 617 DSGVWKYIGPDKKPSHSVSIRAIEHHRY 644


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,517,335
Number of Sequences: 37544
Number of extensions: 311122
Number of successful extensions: 881
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)