Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I19
         (567 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)                   31   0.66 
SB_15059| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.87 
SB_44965| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_45302| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21)           27   8.1  
SB_978| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   8.1  
SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)
          Length = 300

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 195 YYGYHGPKTANNIQHNTDCEMVEAPCTNGSG 287
           YYGY   K  +N QH   C+ V   C+  +G
Sbjct: 93  YYGYGCSKKCSNCQHGATCDPVNGTCSCQTG 123


>SB_15059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 947

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 408 GLGLTVCQQDSIWKNHPLVYACFVDNRCYQRSASA 304
           G G T+C  DS+    P+     V+NRC   SA A
Sbjct: 206 GAGSTMCGTDSVSSGSPITTIYAVENRCENYSAQA 240



 Score = 30.7 bits (66), Expect = 0.87
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 408 GLGLTVCQQDSIWKNHPLVYACFVDNRCYQRSASA 304
           G G T+C  DS+    P+     V+NRC   SA A
Sbjct: 364 GAGSTMCGTDSVSSGSPITTIYAVENRCENYSAQA 398



 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 402 GLTVCQQDSIWKNHPLVYACFVDNRCYQRSASA 304
           G T+C  DS+    P+     V+NRC   SA A
Sbjct: 271 GSTMCGTDSVSSGSPITTIYAVENRCENYSAQA 303


>SB_44965| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1114

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +1

Query: 151 NQWVNARTYIYQQIVTTDIMDLKQQTIFNTTQIARW*RHHVPTA 282
           NQ +      Y+ IV  D +D  +     T  I RW + H P A
Sbjct: 177 NQLLRLEAARYKDIVIGDFLDTYRNLTLKTILILRWAKKHCPQA 220


>SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1937

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
 Frame = +3

Query: 192 CYYGYHGP----KTANNIQHNTDCEMVEAPCTNGSGTLQAGSR 308
           C  GY G     K  N  + N +C+ ++A CTN  G+     R
Sbjct: 861 CERGYQGNGEDCKDINECEQNHECDPLKAVCTNTEGSYSCTCR 903


>SB_45302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 586

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query: 249 CEMVEAPCTNGSGTLQAGSRKRSADNSDYP--QSKRIREDDSSIWSLVGTRSSPSHSASA 422
           CEM++ P    SG   +   K  A N  YP  ++K  RE +S+I +  GT  +    A A
Sbjct: 19  CEMLDKPHIQVSGITLSKHGKTIAANKRYPGIEAKAQRECESTIRAPKGTHPAGCQIALA 78


>SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21)
          Length = 291

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 93  DSRNNFNDVKPASLCNEIRQPVGQCQNIHISTNCYYGYHG 212
           D+ NN N+ K  SLC     P   C      +  YYGY+G
Sbjct: 185 DAANNLNNTKLPSLCGACSNPT--CPG--DESERYYGYNG 220


>SB_978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1045

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 294 QAGSRKRSADNSDYPQSKRIREDDSSIWSLVGTRSS-PSH 410
           +A  RK +  N D+P  KR+R+ D   W +  +R+  P H
Sbjct: 353 RAHKRKGNHSNKDFPPLKRLRQMD---WDVADSRAEMPQH 389


>SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2973

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 354  REDDSSIWSLVGTRSSPSHSASAFNVNTPKYYTMCLTL 467
            R D ++ WS  G  SSP+ ++ A    TP + T+   L
Sbjct: 1183 RPDQNNSWSQCGLLSSPTTTSPAKRRKTPSWRTLAPAL 1220


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,436,679
Number of Sequences: 59808
Number of extensions: 386884
Number of successful extensions: 1231
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)