Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I19
         (567 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16143.1 68417.m02447 importin alpha-2, putative (IMPA-2) sim...    32   0.31 
At1g27850.1 68414.m03413 expressed protein similar to En/Spm-lik...    31   0.54 
At5g40250.1 68418.m04883 zinc finger (C3HC4-type RING finger) fa...    29   2.2  
At4g04460.1 68417.m00648 aspartyl protease family protein contai...    29   2.2  
At3g57310.1 68416.m06379 protease inhibitor/seed storage/lipid t...    29   2.2  
At4g05250.1 68417.m00793 ubiquitin family protein contains INTER...    28   3.8  
At4g00990.1 68417.m00133 transcription factor jumonji (jmjC) dom...    28   3.8  
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains...    28   3.8  
At3g22690.1 68416.m02863 pentatricopeptide (PPR) repeat-containi...    27   8.7  
At2g26760.1 68415.m03209 cyclin, putative similar to CYCB1-1 pro...    27   8.7  

>At4g16143.1 68417.m02447 importin alpha-2, putative (IMPA-2)
           similar to importin alpha 2 [Capsicum annuum]
           GI:13752562; contains Pfam profiles PF01749: Importin
           beta binding domain, PF00514:
           Armadillo/beta-catenin-like repeat; non-consensus GG
           donor splice site at exon 1 and 6; CT acceptor splice
           site at exon 2
          Length = 444

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 455 HCVIFWCVYIKG*SRMAW 402
           HCVIFWC  I+G S   W
Sbjct: 421 HCVIFWCALIQGLSLCVW 438


>At1g27850.1 68414.m03413 expressed protein similar to En/Spm-like
            transposon protein GB:AAB95292 GI:2088658 from
            [Arabidopsis thaliana]
          Length = 1148

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
 Frame = +3

Query: 144  IRQPVGQCQNIHISTNCYYGYHGPKTAN-NIQHNTDCEMVEAPCTNGSGTLQAGS--RKR 314
            ++ PV Q  N    T  Y G+   +  + +++ +T+     +    GS +++ GS  R+R
Sbjct: 710  MKSPVIQANNSSCFTRSYEGFSYSRDRSISLRSSTETASASSSWDYGS-SIRKGSHIRQR 768

Query: 315  SADNSDYPQSKRIREDDSSIWSLVGTRSSPSHSASAFNVNTPKYYTMC 458
            S    D  ++ R   +  S+ ++  +    SH+  A NV     + MC
Sbjct: 769  SGSTLDL-ETHRYDTNSKSLSTMSSSSGMSSHTFQALNVMPEDSFEMC 815


>At5g40250.1 68418.m04883 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 finger protein RHX1a
           [Arabidopsis thaliana] GI:3790591; contains Pfam profile
           PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 376

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +1

Query: 124 LLRFAMKYANQWVNARTYIYQQIVTTDIMDLKQQTIFNTTQIARW*RHHVPTAPV-HYKR 300
           L+RF +K+ +   ++R+  + +I T+D +  + Q +F+    +   +  +   PV HYK 
Sbjct: 65  LVRFLIKHPSATASSRSNRFPEISTSDALQRQLQQLFHLND-SGLDQAFIDALPVFHYKE 123

Query: 301 VRGS 312
           + GS
Sbjct: 124 IVGS 127


>At4g04460.1 68417.m00648 aspartyl protease family protein contains
           Pfam profiles: PF00026 eukaryotic aspartyl protease,
           PF03489 surfactant protein B, PF05184 saposin-like type
           B, region 1
          Length = 508

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 276 NGSGTLQAGSRKRSADNSDYPQSKRIREDDSSIWS 380
           NG GT++ G +KR  D S+   S+   ++  S WS
Sbjct: 28  NGDGTIRIGLKKRKLDRSNRLASQLFLKNRGSHWS 62


>At3g57310.1 68416.m06379 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           profile: PF00234 protease inhibitor/seed storage/LTP
           family
          Length = 103

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -2

Query: 359 LSYTLALWI--IAVISAPLPRTRL*CTGAVGTWCLYHLAICVVLNIVCCFRSMI 204
           + +T  L++  + ++ +PL  TR      VG W +   A C+V N++ C  +++
Sbjct: 1   MKFTKLLFVASVMIVMSPLAPTR---ATVVGGWGIEEKAACIVTNLMSCLPAIL 51


>At4g05250.1 68417.m00793 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 318

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 112 TMSSLLRFAMKYANQWVNARTYIYQQIVTTDIMDLKQQTIFNTTQI 249
           TM  +     KY    V+ +T I+Q +V  D +D+KQ  I N + I
Sbjct: 22  TMLEIKEKIEKYQCIPVSKQTLIFQGVVLQDHLDIKQCVILNHSHI 67


>At4g00990.1 68417.m00133 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain
          Length = 840

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 413 CFSL*CKHTKILHNVFNIKICIHCNSVN*YCSLMVKKLYS 532
           C    C H KIL +  ++  C  CN    YC   +K+ YS
Sbjct: 75  CLGSTCHHCKILTSESDLIFCSKCNK-KCYCFDCIKRSYS 113


>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
           PROSITE domains, PS00674: AAA-protein family signature
           and PS00017: ATP/GTP-binding site motif A (P-loop)
          Length = 1954

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +3

Query: 210 GPKTANNIQHNTDCEMVEAPCTNGSGTLQAGSRKRSADNSDYPQSKRIREDDSSIWSLVG 389
           G  T      N + +++ +   NG+G L+  ++K     S       IREDDS   + V 
Sbjct: 337 GNGTGIREDENKEMDVIVSESGNGTGILEGENKKMEVMVSGSGNGTGIREDDSDFAAKVK 396

Query: 390 TR 395
            R
Sbjct: 397 NR 398


>At3g22690.1 68416.m02863 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 978

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 212 SMISVVTIC*YMYVLALTHWLAYFIAKRS-RLDI 114
           +M+S+ + C ++  L L  W+ Y+I K   +LD+
Sbjct: 472 TMMSIASACGHLGALDLAKWIYYYIEKNGIQLDV 505


>At2g26760.1 68415.m03209 cyclin, putative similar to CYCB1-1
           protein [Petunia x hybrida] GI:6093215, B-type cyclin
           [Nicotiana tabacum] GI:849074; contains Pfam profiles
           PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
           C-terminal domain
          Length = 387

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
 Frame = -1

Query: 441 LVCLH*R-LKQNGLG--LTVCQQDSIWKNHPLVYACFVDNRCYQRSASA-NPLVMYRSRW 274
           L  +H R L+  GLG  L  C+ + IW      + C  DN   ++   A    ++ +  W
Sbjct: 196 LTMVHRRELQLLGLGAMLIACKYEEIWAPEVNDFVCISDNAYNRKQVLAMEKSILGQVEW 255

Query: 273 YM-VPLP 256
           Y+ VP P
Sbjct: 256 YITVPTP 262


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,976,002
Number of Sequences: 28952
Number of extensions: 258473
Number of successful extensions: 695
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)