Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I18
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    27   0.76 
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    26   1.8  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   3.1  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   3.1  
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz...    25   3.1  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    25   5.4  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    24   7.1  

>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 27.5 bits (58), Expect = 0.76
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 19  CALQMRSPAKISPCEEMSLNPQRKRKINTRS 111
           C L  + PA   P + M+ +PQ   K+ T S
Sbjct: 518 CKLMAKLPAHSGPVQSMAFHPQETSKVATSS 548


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +2

Query: 161  LPDNPVDTTRLNQT*NYPD*YIYSLSNPHCNLCNLERPTK*LLLCARNIHVSMSTIIA 334
            L +NP+ +   +   N PD   Y L      LC+L + TK +L+ +     S+S I +
Sbjct: 1383 LLENPMQSKVTHIILNLPDIEAYVLFVKSLQLCSLYKDTKFILVTSTRQKESLSKIFS 1440


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 30  NEIASKNITLRGNVPKSTKEKEDQYPVAPWL 122
           N  +S++    G  P S +    Q+P+ PWL
Sbjct: 188 NNSSSEDTQPNGKRPSSLQSNFSQFPLNPWL 218


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 110 RTLATSSLYFCRLRLSYLPDNPVDTTR 190
           R+L  +S +F RLR +Y+   P+DT R
Sbjct: 268 RSLGANS-HFIRLRSNYISAKPLDTDR 293


>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 315 DTCIFLAHNKSYFVGRSKLHR 253
           DT   + H + YFV R ++HR
Sbjct: 137 DTISKVKHEQEYFVARERIHR 157


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 4   HENRGCALQMRSPAKISPCEEMSLNPQRKRKINTRSHP 117
           H+   C +++    K+  CE   L  +  R++N R HP
Sbjct: 718 HQADACIVRVMKDRKV--CEHNQLMAEVTRQLNPRFHP 753


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 248 NAGLIGNIYISLDSFKSGLGES 183
           N  L+GN YIS ++   GL  S
Sbjct: 100 NEPLVGNYYISTEALGDGLNRS 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,539,676
Number of Sequences: 5004
Number of extensions: 29288
Number of successful extensions: 70
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)