Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I18
         (384 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0519 - 19945456-19945653,19947110-19947112                       50   8e-07
11_06_0495 - 24319531-24320831,24320923-24321109,24322919-243230...    44   4e-05
06_01_0289 - 2111768-2114377,2114970-2115025,2115272-2115323           28   2.9  
02_01_0684 - 5071994-5072134,5072240-5072365,5072452-5072608,507...    27   3.8  
08_02_1400 + 26779193-26779245,26779622-26779766,26779950-267810...    27   6.7  
04_03_0153 + 11919769-11919880,11920190-11920488,11921909-119220...    27   6.7  

>12_02_0519 - 19945456-19945653,19947110-19947112
          Length = 66

 Score = 49.6 bits (113), Expect = 8e-07
 Identities = 22/37 (59%), Positives = 28/37 (75%)
 Frame = +3

Query: 45  KNITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGS 155
           KNIT RG+VP++T +K + YPV P +L  FIFVV GS
Sbjct: 17  KNITKRGSVPETTVKKGNDYPVGPMVLGFFIFVVIGS 53


>11_06_0495 -
           24319531-24320831,24320923-24321109,24322919-24323062,
           24324467-24324469
          Length = 544

 Score = 44.0 bits (99), Expect = 4e-05
 Identities = 19/33 (57%), Positives = 25/33 (75%)
 Frame = +3

Query: 45  KNITLRGNVPKSTKEKEDQYPVAPWLLALFIFV 143
           KNIT RG+VP++T +K + YPV P +L  FIFV
Sbjct: 17  KNITKRGSVPETTVKKGNDYPVGPLVLGFFIFV 49


>06_01_0289 - 2111768-2114377,2114970-2115025,2115272-2115323
          Length = 905

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 86  LCGFRDISSQGDIFAGDLICNAHPLFSC 3
           LC  R I   G+ F+GD+   A+ LF C
Sbjct: 317 LCNLRHIDLSGNHFSGDITRLANTLFPC 344


>02_01_0684 -
           5071994-5072134,5072240-5072365,5072452-5072608,
           5073115-5073224,5073309-5073456,5073581-5073735,
           5074144-5074249,5074337-5074436,5074775-5074880,
           5075013-5075444
          Length = 526

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 324 VDIDTCIFLAHNKSYFVGRSKLHRLQC 244
           +D+D    L HN+  F    +LHR++C
Sbjct: 390 IDVDGNGILTHNELQFFFEEQLHRMEC 416


>08_02_1400 +
           26779193-26779245,26779622-26779766,26779950-26781059,
           26781153-26781404,26782150-26782230,26782623-26782770,
           26782858-26783264,26783557-26783613
          Length = 750

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 89  KGRSIPGRTLATSSLYFCRLRLSYLPDNPVD 181
           +GR IP R + +S LY C    S LP NP +
Sbjct: 44  RGRMIPFRLMGSSRLYECS---STLPVNPAE 71


>04_03_0153 +
           11919769-11919880,11920190-11920488,11921909-11922024,
           11922113-11922248,11922959-11923006,11924130-11924228,
           11924317-11924385,11924465-11924599,11924687-11924755,
           11925221-11925276,11925465-11925624,11926534-11926698,
           11927484-11927568,11927646-11927849,11928396-11928487,
           11928571-11928613,11930727-11930884,11931520-11931630,
           11931947-11932012,11933716-11933784,11934181-11934255,
           11934330-11934506,11934598-11934683,11936259-11936313,
           11936901-11936939,11938105-11938230,11938319-11938432,
           11939208-11939265,11939485-11939623,11939698-11939783,
           11939842-11940041
          Length = 1148

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 257 IDCNAGLIGNIYISLDS-FKSGLGESYRLDYLEDS 156
           +D    ++G ++ SL S  +  +G+S  LDYL DS
Sbjct: 287 LDIRVAVVGGVHFSLLSKVQHDIGDSCSLDYLIDS 321


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,390,742
Number of Sequences: 37544
Number of extensions: 171472
Number of successful extensions: 419
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)