Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I18
         (384 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43689| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.060
SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13)           29   0.98 
SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.0  
SB_18564| Best HMM Match : ShTK (HMM E-Value=6.5)                      27   5.2  
SB_37888| Best HMM Match : Glycos_transf_4 (HMM E-Value=4.1)           26   9.2  
SB_34836| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  
SB_15922| Best HMM Match : DEAD (HMM E-Value=0.25)                     26   9.2  
SB_58853| Best HMM Match : SNF (HMM E-Value=0)                         26   9.2  
SB_57396| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  
SB_52713| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-26)                 26   9.2  

>SB_43689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 33.5 bits (73), Expect = 0.060
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = -3

Query: 229 IYISVWIVLSLV*ASRIDWIIWKIAEPQTTKIKRASSQG 113
           +++ +WIVLSL+    + ++IW I   +TT++  A  QG
Sbjct: 229 VFVPMWIVLSLLCLLVLYYVIWSIIFVRTTEVLPAQRQG 267


>SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13)
          Length = 661

 Score = 29.5 bits (63), Expect = 0.98
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = +3

Query: 36  IASKNITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGSAIFQIIQS 179
           +A++N    G  P+   ++ D+  + P     F++++ G+A+FQ I+S
Sbjct: 128 LANQNKRFMGKSPRIGPKRPDE-KLTPRTTLFFVYLLFGAAVFQTIES 174


>SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2337

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +2

Query: 269  RPTK*LLLCARNIHVSMSTIIASYNIFNICLYILFLLC 382
            RP + + L  RN  V +S+II SY+IF    + ++++C
Sbjct: 1411 RPPQRIDLRYRNWEVGLSSIIPSYDIFTPDEHDIWIMC 1448


>SB_18564| Best HMM Match : ShTK (HMM E-Value=6.5)
          Length = 348

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = +2

Query: 284 LLLCARNI-HVSMSTI--IASYNIFNICLYILFLLC 382
           L +CA ++  V  S++  + +Y+IF +C Y +F +C
Sbjct: 71  LRVCAYSVFRVCASSVFRVCAYSIFRVCAYSVFRVC 106


>SB_37888| Best HMM Match : Glycos_transf_4 (HMM E-Value=4.1)
          Length = 355

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
 Frame = +2

Query: 245 HCNLCNLERPTK*LLLCARNIHVSMSTII------ASYNIFNICLYILFLLC 382
           H N+      T+ +LLC   I    + I        +YNI  +C Y+L  LC
Sbjct: 229 HYNIAAFAIITQAVLLCGTTISAGTAIITQAVLLCGTYNIARLCHYLLHKLC 280


>SB_34836| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 285 SYFVGRSKLHRLQCGFDREYIY 220
           S+ VGR+ L+RL    D++Y+Y
Sbjct: 100 SWTVGRNILYRLSQALDKQYLY 121


>SB_15922| Best HMM Match : DEAD (HMM E-Value=0.25)
          Length = 409

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 285 SYFVGRSKLHRLQCGFDREYIY 220
           S+ VGR+ L+RL    D++Y+Y
Sbjct: 289 SWTVGRNILYRLSQALDKQYLY 310


>SB_58853| Best HMM Match : SNF (HMM E-Value=0)
          Length = 905

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 66  NVPKSTKEKEDQYPVAPWLLALFIFVVCGSAIF 164
           N  K+ +EK D YP  PW  A+   ++C S +F
Sbjct: 489 NFAKAVEEKLD-YP--PWGYAMIALLICSSFLF 518


>SB_57396| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 757

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 6   RKQRMRIANEIASKNITLRGNVPKSTKEKEDQYPVAP 116
           R  R  I N + S ++TL G +  ST++ ED+ P  P
Sbjct: 74  RNLRRSIENVVLS-SVTLGGGLYSSTEQVEDEAPPLP 109


>SB_52713| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-26)
          Length = 333

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 48  NITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGSAIFQIIQSIRL 188
           N +L G    +       Y V  W+LA  IFV  G+ ++ II   RL
Sbjct: 2   NASLNGTSSPTLPSDPLWYVVLSWMLAGVIFVGNGTVMYLIITRRRL 48


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,214,153
Number of Sequences: 59808
Number of extensions: 206528
Number of successful extensions: 480
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)