Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I18
         (384 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81095-2|CAB03157.1|   65|Caenorhabditis elegans Hypothetical pr...    86   7e-18
AF047660-4|AAM54169.1|   63|Caenorhabditis elegans Hypothetical ...    83   9e-17
AL132862-33|CAB70222.3|  308|Caenorhabditis elegans Hypothetical...    29   1.1  
AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine re...    29   1.1  
AC025716-13|AAL32239.1|  289|Caenorhabditis elegans Serpentine r...    27   3.4  
Z93383-6|CAB07623.1|  283|Caenorhabditis elegans Hypothetical pr...    27   4.5  
U39655-1|AAA80408.1|  395|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U39472-7|AAP86620.2|  339|Caenorhabditis elegans Serpentine rece...    27   6.0  
AF022983-7|AAB69943.1|  306|Caenorhabditis elegans Hypothetical ...    26   7.9  
AF000191-3|AAB52882.1|  522|Caenorhabditis elegans Mediator prot...    26   7.9  

>Z81095-2|CAB03157.1|   65|Caenorhabditis elegans Hypothetical
           protein F59F4.2 protein.
          Length = 65

 Score = 86.2 bits (204), Expect = 7e-18
 Identities = 37/62 (59%), Positives = 49/62 (79%)
 Frame = +3

Query: 3   ARKQRMRIANEIASKNITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGSAIFQIIQSI 182
           A KQRM +AN+  SKN+  RGNV KS K  ED+YP APWL+ LF+FVVCGSA+F+II+ +
Sbjct: 2   APKQRMTLANKQFSKNVNNRGNVAKSLKPAEDKYPAAPWLIGLFVFVVCGSAVFEIIRYV 61

Query: 183 RL 188
           ++
Sbjct: 62  KM 63


>AF047660-4|AAM54169.1|   63|Caenorhabditis elegans Hypothetical
           protein T09A12.5 protein.
          Length = 63

 Score = 82.6 bits (195), Expect = 9e-17
 Identities = 36/62 (58%), Positives = 47/62 (75%)
 Frame = +3

Query: 3   ARKQRMRIANEIASKNITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGSAIFQIIQSI 182
           A KQRM +AN   SKN+T RGNVPK  K  E ++P + WL+ LFIFVVCGSAIF++I+ I
Sbjct: 2   APKQRMAVANAQFSKNVTQRGNVPKGNKTNESKFPTSQWLIGLFIFVVCGSAIFEVIRYI 61

Query: 183 RL 188
           ++
Sbjct: 62  KV 63


>AL132862-33|CAB70222.3|  308|Caenorhabditis elegans Hypothetical
           protein Y73F8A.3 protein.
          Length = 308

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -1

Query: 366 IYKQILKILYEAIIVDIDT---CIFLAHNKSYFVGRSKLH 256
           I+  +  IL   + +DI T   C+FL   + +FV RS LH
Sbjct: 49  IFNMVYSILNVLVPIDIHTYSYCMFLIIKRGWFVERSDLH 88


>AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 66 protein.
          Length = 286

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 378 SKNKIYKQILKILYEAIIVDIDTCIFLAHNKSYFVGR 268
           SK   +K    ++Y    +DI    F+ HNK Y+V R
Sbjct: 33  SKRITWKSEFSLIYTRFAIDIVYTFFVPHNKIYYVLR 69


>AC025716-13|AAL32239.1|  289|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 64 protein.
          Length = 289

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 378 SKNKIYKQILKILYEAIIVDIDTCIFLAHNKSYFVGR 268
           SK   +K  L ++Y     D+    F+ HNK Y++ R
Sbjct: 34  SKRIAWKSELSLIYTRFAFDMFYTFFVPHNKIYYIIR 70


>Z93383-6|CAB07623.1|  283|Caenorhabditis elegans Hypothetical
           protein F54B8.6 protein.
          Length = 283

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 378 SKNKIYKQILKILYEAIIVDIDTCIFLAHNKSYFV 274
           SK  I+K  L I Y    +D+   + ++ NK+YF+
Sbjct: 33  SKKIIFKPSLSIFYCRFFIDVFLTLSVSINKTYFL 67


>U39655-1|AAA80408.1|  395|Caenorhabditis elegans Hypothetical
           protein C46F4.1 protein.
          Length = 395

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
 Frame = +3

Query: 48  NITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGSAIFQIIQSIRLA*TRLKTIQTDIY 227
           N++ R    KS  +  D+  + P  +++ IF    S +F II   R      K ++T I 
Sbjct: 17  NVSSRAITDKSFLQYYDEIHI-PLSISICIFGAA-SNVFNIIVLTR------KRMRTPIN 68

Query: 228 IPYQTRIAIYVIWSVLQNSF-YCVLEIYMYQC 320
           I   T ++I   W +  N F Y +LE Y YQC
Sbjct: 69  I-LLTGLSI-AQWLLATNYFLYLLLEYYRYQC 98


>U39472-7|AAP86620.2|  339|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 35 protein.
          Length = 339

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 121 SQGATGY*SSFSFVDLGTFPRKVIFLLAISFAMRILCFRA 2
           S+G TGY  +  F+       +V++ L + FA+ +LC  A
Sbjct: 162 SEGPTGYKLASCFMQKDIPLDRVLYTLGMYFALSLLCLLA 201


>AF022983-7|AAB69943.1|  306|Caenorhabditis elegans Hypothetical
           protein R13D11.1 protein.
          Length = 306

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = -3

Query: 157 AEPQTTKIKRASSQGATGY*SSFSFVDLGTFPRKVIFLLAISFAM 23
           A+P   ++K +++  A  + S F  +DLG F   VI L+AI FA+
Sbjct: 95  AQPLPLQLKISATVTALFFPSLFRRMDLGDFSNGVI-LVAIIFAL 138


>AF000191-3|AAB52882.1|  522|Caenorhabditis elegans Mediator protein
           1.2 protein.
          Length = 522

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 188 RLNQT*NYPD*YIYSLSNPHCNLCNLERPTK 280
           +LN+T + P+   Y++S   CNL  ++ P +
Sbjct: 473 KLNETWSIPNMLTYAVSGSDCNLAKIKVPLR 503


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,475,457
Number of Sequences: 27780
Number of extensions: 161757
Number of successful extensions: 391
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)