Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I18
         (384 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27350.1 68414.m03331 expressed protein contains 1 transmembr...    55   2e-08
At1g27330.1 68414.m03329 expressed protein similar to EST gb|AA6...    55   2e-08
At4g24120.1 68417.m03462 transporter, putative similar to iron-p...    30   0.46 
At1g80810.1 68414.m09481 expressed protein similar to androgen-i...    29   1.4  
At3g09540.1 68416.m01133 pectate lyase family protein simliar to...    28   2.5  
At2g01460.1 68415.m00069 phosphoribulokinase/uridine kinase fami...    27   5.7  
At2g37610.1 68415.m04614 hypothetical protein                          26   9.9  
At2g29560.1 68415.m03590 enolase, putative similar to enolase [S...    26   9.9  

>At1g27350.1 68414.m03331 expressed protein contains 1 transmembrane
           domain; similar to ribosome associated membrane protein
           RAMP4 GI:4585827 [Rattus norvegicus]; similar to ESTs
           gb|T20610 and gb|AA586199
          Length = 68

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 25/45 (55%), Positives = 33/45 (73%)
 Frame = +3

Query: 45  KNITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGSAIFQIIQS 179
           KNI  RG VP++T +K   YPV P LL  F+FVV GS++FQII++
Sbjct: 17  KNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIRT 61


>At1g27330.1 68414.m03329 expressed protein similar to EST
           gb|AA650671 and gb|T20610
          Length = 68

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 25/45 (55%), Positives = 33/45 (73%)
 Frame = +3

Query: 45  KNITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGSAIFQIIQS 179
           KNI  RG VP++T +K   YPV P LL  F+FVV GS++FQII++
Sbjct: 17  KNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIRT 61


>At4g24120.1 68417.m03462 transporter, putative similar to
           iron-phytosiderophore transporter protein yellow stripe
           1 [Zea mays] GI:10770865; contains Pfam profile PF03169:
           OPT oligopeptide transporter protein
          Length = 665

 Score = 30.3 bits (65), Expect = 0.46
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +3

Query: 51  ITLRGNVPKSTKEKEDQYPVAPWLLALFIFVVCGSAIFQII 173
           + L GN PKS KE     P   W+ A ++FVVC   +F +I
Sbjct: 141 VNLEGNSPKSVKE-----PGLGWMTA-YLFVVCFIGLFVLI 175


>At1g80810.1 68414.m09481 expressed protein similar to
           androgen-induced prostate proliferative shutoff
           associated protein (GI:4559410) [Homo sapiens]; similar
           to bimD (GI:168025) [Emericella nidulans]
          Length = 826

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 7   ENRGCALQMRSPAKISPCEEMSLNPQRKRKINTRSH 114
           ++RG +L M SP   S C+ +   P+    +NT+ H
Sbjct: 237 KSRGTSLDMYSPVVSSICQSVFNTPKVHSPVNTKEH 272


>At3g09540.1 68416.m01133 pectate lyase family protein simliar to
           style development-specific protein 9612 SP:P24396 from
           [Lycopersicon esculentum]
          Length = 378

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -1

Query: 378 SKNKIYKQILKILYEAIIVDIDTCIFLAHNKSYFVGRSKLH 256
           S    Y  ++ I  E+  + +  C F+ HNK+  +G    H
Sbjct: 185 SLKNYYDGLIDITRESTDITVSRCHFMNHNKTMLIGADTSH 225


>At2g01460.1 68415.m00069 phosphoribulokinase/uridine kinase family
           protein contains Pfam profile PF00485:
           Phosphoribulokinase / Uridine kinase family
          Length = 723

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 257 IDCNAGLIGNIYISLDS-FKSGLGESYRLDYLEDS 156
           +D    ++G ++ SL S  +  +G+S  LDYL DS
Sbjct: 184 LDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDS 218


>At2g37610.1 68415.m04614 hypothetical protein
          Length = 161

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 41  QQKYHLARKCP*IH-KGKGRSIPGRTLATSSLYFCRLRLSYLPDNPVDT 184
           + +  + R+CP    K       GRT+      +CR RLS+LP++ V++
Sbjct: 103 ENRIPIVRECPPAPMKRSSEMFRGRTM------YCRRRLSFLPEDDVNS 145


>At2g29560.1 68415.m03590 enolase, putative similar to enolase
           [Spinacia oleracea] gi|8919731|emb|CAB96173
          Length = 475

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 296 HTIKAIL*DAPNYIDCNAGLIGNIYISLDSFKSGL 192
           H +KA++ +    + CN G  G +   + S K GL
Sbjct: 232 HHLKAVISEKNGGLGCNVGEDGGLAPDISSLKEGL 266


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,856,745
Number of Sequences: 28952
Number of extensions: 148224
Number of successful extensions: 351
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)