Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I17
         (375 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0981 + 9931542-9931606,9931779-9933105                           31   0.39 
01_05_0369 - 21468204-21468595,21471417-21471606,21471680-214718...    28   2.7  
05_04_0202 - 19010953-19013355                                         27   4.8  
12_02_1228 - 27190983-27191291,27191442-27191675,27191994-271922...    26   8.4  
12_01_0560 - 4532398-4532724,4532975-4533235,4533670-4533855,453...    26   8.4  
06_03_1109 - 27672176-27672223,27672371-27672452,27674169-27674395     26   8.4  
01_01_1124 + 8916863-8917090,8917745-8917936,8918115-8918280,891...    26   8.4  

>12_01_0981 + 9931542-9931606,9931779-9933105
          Length = 463

 Score = 30.7 bits (66), Expect = 0.39
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 56  YGMGYNQMPFHPEHHHNRLRSPY 124
           Y   Y+Q PFHP HHH     P+
Sbjct: 148 YNPYYHQEPFHPPHHHQYNPEPH 170


>01_05_0369 -
           21468204-21468595,21471417-21471606,21471680-21471867,
           21484028-21484580
          Length = 440

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +1

Query: 178 ATRVGQHARRLLQKVPDARVIVSRH--RRQRIQGDYTFNLL**EGHRCQSPDRSSDGAS 348
           AT  G  AR   Q+ P+A     RH  +R R+ GD+  N     G  C       DGA+
Sbjct: 101 ATSAG--ARETRQRRPEAEQWRQRHCCQRGRVSGDFPTNRRRRRGRGCTCEAEGEDGAA 157


>05_04_0202 - 19010953-19013355
          Length = 800

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 81  LSIRNTITIG*EAHTSARTS-SIPVGSGPNSPA 176
           LS   T   G E  T  +TS  +PVG GP SPA
Sbjct: 119 LSFLLTDASGAEIRTHRKTSFRVPVGVGPGSPA 151


>12_02_1228 -
           27190983-27191291,27191442-27191675,27191994-27192269,
           27192420-27192696,27192985-27193283,27193341-27193454,
           27193909-27194118,27194567-27194699,27194941-27195221
          Length = 710

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 158 WSELSSELRELDNMLADFYRKF 223
           W+ LSSEL +L  ++ +F RK+
Sbjct: 451 WASLSSELMQLFGLIWNFVRKY 472


>12_01_0560 -
           4532398-4532724,4532975-4533235,4533670-4533855,
           4533922-4533936,4533941-4534246,4535032-4535135,
           4535669-4535801
          Length = 443

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 14  FVLCL-AAAVSAAPYYGMGYNQMPFHPEHHHNRLRSPY 124
           F+L L  AA +A+PY+ +GYN +      +H   ++ Y
Sbjct: 214 FLLALHMAAEAASPYFRLGYNSLGAFATINHLHFQAYY 251


>06_03_1109 - 27672176-27672223,27672371-27672452,27674169-27674395
          Length = 118

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 23  CLAAAVSAAPYYGMGYNQMPFHPEHHHNRLRS 118
           CL++AV AA   G GY    F  +    RLR+
Sbjct: 20  CLSSAVDAAAAAGNGYRTTAFLVDDEGRRLRA 51


>01_01_1124 +
          8916863-8917090,8917745-8917936,8918115-8918280,
          8918373-8918794
          Length = 335

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 20 LCLAAAVSAAPYYGMGYNQMPFHPEH 97
          L LA +V   P+YG GY   P   +H
Sbjct: 13 LLLATSVHGNPWYGYGYGLFPQFYDH 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,024,753
Number of Sequences: 37544
Number of extensions: 215747
Number of successful extensions: 747
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)