Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_I17
(375 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18251| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=9.9) 29 0.93
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0) 28 2.1
SB_3669| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_40488| Best HMM Match : HEAT (HMM E-Value=6.3e-08) 27 5.0
SB_11801| Best HMM Match : DEAD (HMM E-Value=5e-05) 27 5.0
SB_7151| Best HMM Match : TCP (HMM E-Value=0.92) 27 5.0
SB_37209| Best HMM Match : Ion_trans (HMM E-Value=1.7e-05) 27 5.0
SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0) 27 6.5
SB_24152| Best HMM Match : PKD (HMM E-Value=4.1e-29) 27 6.5
SB_18988| Best HMM Match : Brix (HMM E-Value=3.4e-06) 27 6.5
SB_18787| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
SB_44405| Best HMM Match : Extensin_2 (HMM E-Value=4.5) 26 8.7
>SB_18251| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=9.9)
Length = 93
Score = 29.5 bits (63), Expect = 0.93
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 56 YGMGYNQMPFHPEHHHNRLRSP 121
Y Y+ PFHP HH R R P
Sbjct: 30 YFYRYHHRPFHPHHHRIRRRPP 51
>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
Length = 960
Score = 28.3 bits (60), Expect = 2.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 304 GHRCQSPDRSSDGASCS*VRGRC 372
GH C P ++GA C+ V G+C
Sbjct: 363 GHNCAHPCNCTNGARCNAVTGQC 385
>SB_3669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 27.9 bits (59), Expect = 2.8
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 32 AAVSAAPYYGMGYNQMPFHPEHHHNRLRSPYFGEDVFDTGRFWSELSS 175
A +S AP Y + PF P H+ + G ++F GR + L S
Sbjct: 76 AGISLAPLYYTAFTNAPFPPRDHYQYYIFVFLGGELF--GRSYLVLMS 121
>SB_40488| Best HMM Match : HEAT (HMM E-Value=6.3e-08)
Length = 1185
Score = 27.1 bits (57), Expect = 5.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 8 ALFVLCLAAAVSAAPYYGMGYNQMPF 85
+LF+LC+ A+ APY+ Y +
Sbjct: 806 SLFLLCIQASAVRAPYFSCAYRHQQY 831
>SB_11801| Best HMM Match : DEAD (HMM E-Value=5e-05)
Length = 1442
Score = 27.1 bits (57), Expect = 5.0
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 149 GRFWSELSSELRELDNMLADFYRKF-PTPASSSQGIEGNEYKVTIPLTSFDEKDIV 313
G F S+ +ELR+L+ L D Y+ +S + + + Y I L S D+++ +
Sbjct: 458 GGFISQRHNELRDLEADLLDMYKPLKDLDLNSDRWLYDHRYWSNISLQSADKREAI 513
>SB_7151| Best HMM Match : TCP (HMM E-Value=0.92)
Length = 188
Score = 27.1 bits (57), Expect = 5.0
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 140 FDTGRFWSELSSELRELDNMLADFYRKFPTPASSSQGIE 256
FD SE S +REL + D +RK TPA+++ I+
Sbjct: 11 FDVEHRKSEYKSTVRELLSRYWDRHRKAKTPATAADRIQ 49
>SB_37209| Best HMM Match : Ion_trans (HMM E-Value=1.7e-05)
Length = 822
Score = 27.1 bits (57), Expect = 5.0
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 140 FDTGRFWSELSSELRELDNMLADFYRKFPTPASSSQGIE 256
FD SE S +REL + D +RK TPA+++ I+
Sbjct: 683 FDVEHRKSEYKSTVRELLSRYWDRHRKAKTPATAADRIQ 721
>SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 1589
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 18 FSVLLRPCRRHRTTVWGTTKCLSI 89
FS+ LRPCR T T CLS+
Sbjct: 611 FSIALRPCRSLFTRTQRVTCCLSL 634
>SB_24152| Best HMM Match : PKD (HMM E-Value=4.1e-29)
Length = 1130
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +3
Query: 51 RTTVWGTTKCLSIRNTIT 104
RTT WGTTK + +RNTI+
Sbjct: 188 RTTRWGTTK-IYLRNTIS 204
>SB_18988| Best HMM Match : Brix (HMM E-Value=3.4e-06)
Length = 224
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 164 ELSSELRELDNMLADFYRKFPTPASSSQGIE 256
E +SE + L N+L DF+R T QG+E
Sbjct: 71 ENNSEYKRLKNVLIDFFRGTVTQKVRLQGLE 101
>SB_18787| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 636
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 348 ACTIRRPVRALTTMSFSSKEVKGIVTLYSL 259
A +I PV AL S ++KG+ +LY L
Sbjct: 351 AGSIMNPVYALVGTSLGDDDIKGVQSLYGL 380
>SB_44405| Best HMM Match : Extensin_2 (HMM E-Value=4.5)
Length = 325
Score = 26.2 bits (55), Expect = 8.7
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 50 PYYGMGYNQMPFHPEHHHNR 109
P Y Y +P+ HHHNR
Sbjct: 302 PPYHYHYPPLPYRHHHHHNR 321
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,303,181
Number of Sequences: 59808
Number of extensions: 244304
Number of successful extensions: 700
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 619783250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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