Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_I17
(375 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 29 1.3
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 29 1.3
At1g09540.1 68414.m01070 myb family transcription factor (MYB61)... 29 1.3
At5g67150.1 68418.m08465 transferase family protein similar to a... 28 1.8
At4g05450.1 68417.m00827 adrenodoxin-like ferredoxin 2 similar t... 28 1.8
At3g20475.1 68416.m02592 DNA mismatch repair MutS family protein... 28 2.3
At1g17500.1 68414.m02150 haloacid dehalogenase-like hydrolase fa... 28 2.3
At4g25850.1 68417.m03718 oxysterol-binding family protein contai... 27 4.1
At3g05680.1 68416.m00634 expressed protein 27 4.1
At2g01480.1 68415.m00071 expressed protein contains Pfam PF03138... 27 4.1
At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase fa... 27 5.4
At4g04570.1 68417.m00670 protein kinase family protein contains ... 26 9.4
At2g18960.1 68415.m02213 ATPase 1, plasma membrane-type, putativ... 26 9.4
At2g07560.1 68415.m00875 ATPase, plasma membrane-type, putative ... 26 9.4
At1g17080.1 68414.m02079 expressed protein 26 9.4
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 32 AAVSAAPYYGMGYN-QMPFHPEHHHNRLRSPY 124
A + +PYY GY+ Q P P HH+ L PY
Sbjct: 187 ATIMPSPYY-YGYSLQAPRVPYQHHHHLPQPY 217
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +2
Query: 50 PYYGMGYNQMPFHPE-HHHNRLRSPYF 127
PY + P++P+ HHH R SP F
Sbjct: 206 PYQHHHHLPQPYNPQQHHHQRFSSPSF 232
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 32 AAVSAAPYYGMGYN-QMPFHPEHHHNRLRSPY 124
A + +PYY GY+ Q P P HH+ L PY
Sbjct: 187 ATIMPSPYY-YGYSLQAPRVPYQHHHHLPQPY 217
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +2
Query: 50 PYYGMGYNQMPFHPE-HHHNRLRSPYF 127
PY + P++P+ HHH R SP F
Sbjct: 206 PYQHHHHLPQPYNPQQHHHQRFSSPSF 232
>At1g09540.1 68414.m01070 myb family transcription factor (MYB61)
contains PFAM profile: myb DNA-binding domain PF00249
Length = 366
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 149 GRFWSELSSELR-ELDNMLADFYRKFPTPASSSQGIEGNEYKVTIPLTSFDEKD 307
G WS+++S L DN + + + +GI+ N +K + SF +KD
Sbjct: 86 GNRWSQIASRLPGRTDNEIKNLWNSSIKKKLKQRGIDPNTHKPISEVESFSDKD 139
>At5g67150.1 68418.m08465 transferase family protein similar to
anthranilate N-hydroxycinnamoyl/benzoyltransferase,
Dianthus caryophyllus [gi:2239091]; contains Pfam
transferase family domain PF002458
Length = 448
Score = 28.3 bits (60), Expect = 1.8
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 137 VFDTGRFWSELSSELRELDNML-ADFYRKFPTPASSSQGIEGNEYKVTIPLTSFDEKDIV 313
V D FWS ++ N AD RKFP ++G EY + IPL + + V
Sbjct: 169 VADGSSFWSFFNTWSEICFNGFDADHRRKFPPLLLRGWFLDGIEYPIRIPLPETETPNRV 228
Query: 314 V 316
V
Sbjct: 229 V 229
>At4g05450.1 68417.m00827 adrenodoxin-like ferredoxin 2 similar to
SP|P46656 Adrenodoxin, mitochondrial precursor (Adrenal
ferredoxin) from Mus musculus, SP|P10109 Adrenodoxin,
mitochondrial precursor (Hepatoredoxin) from Homo
sapiens, SP|P29330 Adrenodoxin from Ovis aries; contains
Pfam profile: PF00111 2Fe-2S iron-sulfur cluster binding
domains; identical to cDNA GI: 28192430
Length = 197
Score = 28.3 bits (60), Expect = 1.8
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 236 SSSQGIEGNEYKVTIPLTSFDEKDIVVKARTGLLMVQAVHKYEGDV 373
SS G E E K+TI D ++I VK G+ +++A H+ + D+
Sbjct: 70 SSENGDEETE-KITIIFVDKDGEEIPVKVPIGMSVLEAAHENDIDL 114
>At3g20475.1 68416.m02592 DNA mismatch repair MutS family protein
similar to SP|O43196 MutS protein homolog 5 {Homo
sapiens}; contains Pfam profile PF00488: MutS domain V
Length = 321
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 143 DTGRFWSELSSELRELDNMLADFYRK 220
+T RF+ +S+ RELDN+L D Y K
Sbjct: 4 ETQRFFYH-TSKTRELDNLLGDIYHK 28
>At1g17500.1 68414.m02150 haloacid dehalogenase-like hydrolase family
protein similar to Potential phospholipid-transporting
ATPase (EC 3.6.3.1) from Homo sapiens [SP|O43520], Mus
musculus [SP|P70704]; contains InterPro accession
IPR005834: Haloacid dehalogenase-like hydrolase
Length = 1218
Score = 27.9 bits (59), Expect = 2.3
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +2
Query: 26 LAAAVSAAPYYGMGYNQMPFHPEHHHNRLRSPYFGEDVFDTGRFWSELSSELRE 187
L + PY+ Q HP HH Y+ DV D R W+ ++ RE
Sbjct: 1124 LVTVTTVLPYFAHISFQRFLHPLDHHIIQEIKYYKRDVEDR-RMWTRERTKARE 1176
>At4g25850.1 68417.m03718 oxysterol-binding family protein contains
Pfam profile PF01237: Oxysterol-binding protein
Length = 383
Score = 27.1 bits (57), Expect = 4.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 95 VPDGKAFGCTPYRSTVPP 42
V DGK + C+P + TVPP
Sbjct: 360 VKDGKDWDCSPLQPTVPP 377
>At3g05680.1 68416.m00634 expressed protein
Length = 2057
Score = 27.1 bits (57), Expect = 4.1
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +2
Query: 131 EDVFDTG---RFWSELSSELRE-LDNMLADFYRKFPTPASSSQGIEGNEYKVTIP 283
+D++ G +FW E L E L RK PT SSS+ +G V IP
Sbjct: 1400 DDLYQRGLEDKFWWECPETLPERLPQSSLPAKRKLPTLESSSRRAKGENSSVDIP 1454
>At2g01480.1 68415.m00071 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as 'axi
1 protein from Nicotiana tabacum -related' based on
similarity to axi 1 protein (GB:X80301) (GI:559920) from
[Nicotiana tabacum], which, due to scienitific fraud was
retracted. Retraction in: Schell J. EMBO J 1999 May
17;18(10):2908. PMID:10400497.
Length = 567
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 95 HHHNRLRSPYFGEDVFDTGRFWSELSSELRELDNM 199
H+H+ R P D++D F S LS+++R +D +
Sbjct: 193 HYHSIWRDPSKFGDIYDEEFFVSTLSNDVRVVDTI 227
>At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase family
protein similar to Potential phospholipid-transporting
ATPase (EC 3.6.3.1) from Homo sapiens [SP|Q9Y2Q0,
SP|O43520]; contains InterPro accession IPR005834:
Haloacid dehalogenase-like hydrolase
Length = 1228
Score = 26.6 bits (56), Expect = 5.4
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = +2
Query: 26 LAAAVSAAPYYGMGYNQMPFHPEHHHNRLRSPYFGEDVFDTGRFWSELSSELRE 187
L + PY Q +P HH Y+G D+ D R W+ ++ RE
Sbjct: 1134 LVTVAAVLPYVAHIAFQRFLNPLDHHIIQEIKYYGRDIED-ARLWTRERTKARE 1186
>At4g04570.1 68417.m00670 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 654
Score = 25.8 bits (54), Expect = 9.4
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 260 CLRCLETMTRASGTFCRSRR 201
C C++++T+ + T CRSRR
Sbjct: 90 CYNCVQSLTQNTLTDCRSRR 109
>At2g18960.1 68415.m02213 ATPase 1, plasma membrane-type, putative /
proton pump 1, putative / proton-exporting ATPase,
putative strong similarity to SP|P20649 ATPase 1, plasma
membrane-type (EC 3.6.3.6) (Proton pump 1) {Arabidopsis
thaliana}; contains InterPro accession IPR001757:
ATPase, E1-E2 type; contains Pfam profile PF00690:
Cation transporter/ATPase, N-terminus
Length = 949
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 370 IALVLMNSLHHQKTGPGFDNDVLLIKGG 287
I +V+M + H+K G DN ++L+ GG
Sbjct: 257 IEIVVMYPIQHRKYRDGIDNLLVLLIGG 284
>At2g07560.1 68415.m00875 ATPase, plasma membrane-type, putative /
proton pump, putative similar to P-type
H(+)-transporting ATPase from [Phaseolus vulgaris]
GI:758250, [Lycopersicon esculentum] GI:1621440,
SP|Q03194 {Nicotiana plumbaginifolia}, [Solanum
tuberosum] GI:435001; contains InterPro accession
IPR001757: ATPase, E1-E2 type
Length = 949
Score = 25.8 bits (54), Expect = 9.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 370 IALVLMNSLHHQKTGPGFDNDVLLIKGG 287
I +++M + H+K G DN ++L+ GG
Sbjct: 260 IEIIIMYPIQHRKYRDGIDNLLVLLIGG 287
>At1g17080.1 68414.m02079 expressed protein
Length = 154
Score = 25.8 bits (54), Expect = 9.4
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 41 SAAPYYGMGYNQMPFH 88
S APYY GY +P H
Sbjct: 56 SGAPYYAHGYQTVPVH 71
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,378,322
Number of Sequences: 28952
Number of extensions: 158781
Number of successful extensions: 549
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 507810264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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