Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_I16
(524 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 29 0.42
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 28 0.98
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 27 1.3
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 27 1.7
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 27 2.3
SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual 27 2.3
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 3.0
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 26 4.0
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos... 26 4.0
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc... 25 5.2
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 25 5.2
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 25 6.9
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 25 6.9
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||... 25 9.1
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 29.1 bits (62), Expect = 0.42
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 6 KRYSCDICQKRFYDRTKLNRHIDSHNDIK 92
K+Y C+ C + F L RHI SH + K
Sbjct: 68 KQYVCETCTRAFARLEHLKRHIRSHTNEK 96
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 27.9 bits (59), Expect = 0.98
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 12 YSCDICQKRFYDRTKLNRHIDSHNDIK 92
Y C +C K FY RHI +H K
Sbjct: 26 YKCPLCTKAFYRLEHQTRHIRTHTGEK 52
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +3
Query: 6 KRYSC--DICQKRFYDRTKLNRHIDSHNDIK 92
K +SC D C +FY + L RHI+ H K
Sbjct: 81 KPFSCHYDGCDAQFYTQQHLERHIEVHRKPK 111
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +3
Query: 3 EKRYSCDI--CQKRFYDRTKLNRHIDSHNDIK 92
E+ + CD C K FY ++ L H H ++K
Sbjct: 50 ERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVK 81
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +3
Query: 3 EKRYSCDI--CQKRFYDRTKLNRHIDSH 80
EK + C C+KRF R +L RH+ +H
Sbjct: 29 EKPFECSYPSCKKRFTRRDELIRHVRTH 56
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 6 KRYSCDICQKRFYDRTKLNRHIDSHNDIK 92
K Y C C++ F+ + RHI SH K
Sbjct: 2 KSYECPFCKRVFHRQEHQVRHIRSHTGEK 30
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 26.6 bits (56), Expect = 2.3
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +3
Query: 3 EKRYSCDICQKRFYDRTKLNRHIDSHND 86
++ Y CD+C+ F L RH+ H +
Sbjct: 470 DRPYRCDLCKAGFVRHHDLKRHLRIHEN 497
>SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual
Length = 231
Score = 26.6 bits (56), Expect = 2.3
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +3
Query: 306 YVTGIYHIEVFVYDFTYTNKSNFSVRL*YQSDNFLNFLTVRCS 434
YV G+ + + F TN S FSV+ Q FL L CS
Sbjct: 127 YVLGVCDMTGEIMRFLVTNGSKFSVQQLTQQVKFLRGLHKNCS 169
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 303 LYVTGIYHIEVFVYDFTYTNKSNFS 377
LY+TG HIE V+D Y + + S
Sbjct: 358 LYITGKNHIEKVVFDLKYVTEFSTS 382
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 25.8 bits (54), Expect = 4.0
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +3
Query: 6 KRYSCDICQKRFYDRTKLNRHI 71
K +SC C + F LNRH+
Sbjct: 54 KAFSCSFCNRAFARSDVLNRHV 75
>SPAC607.05 |rpn9||19S proteasome regulatory subunit
Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 25.8 bits (54), Expect = 4.0
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = -1
Query: 146 QRLSESIHLFCDLPLPLPFNVIVRVNMSVKFRPVVESLLANVTGV 12
++L++++ +F D P +P + + N FRP + L A G+
Sbjct: 41 KQLTDALIVFFDTPETVPLRLPLYTNFVNSFRPNINQLKAVYMGL 85
>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 555
Score = 25.4 bits (53), Expect = 5.2
Identities = 18/52 (34%), Positives = 22/52 (42%)
Frame = +3
Query: 219 LLS*LKLHFALKFVRFDFKNALRDKLFQLYVTGIYHIEVFVYDFTYTNKSNF 374
LLS + H F K DK F LYVT E+F YT+ S +
Sbjct: 203 LLSQITPHQRCSFYAQVIKTWYSDKNFTLYVTDYTENELFFPMSPYTSSSRW 254
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +3
Query: 12 YSCDICQKRFYDRTKLNRHIDSHN 83
+ CD C KRF L RH H+
Sbjct: 31 FPCDQCAKRFTRHENLTRHKACHS 54
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 25.0 bits (52), Expect = 6.9
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Frame = +3
Query: 15 SCDICQKRFYDRTKLNRHIDS--HND 86
+C++C K+FY + H+ S H D
Sbjct: 71 NCEVCNKKFYSEGAYSSHMASKKHRD 96
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 12 YSCDICQKRFYDRTKLNRHIDSHNDIK 92
+ C IC+K F + RH H IK
Sbjct: 600 FQCSICKKSFARQHDKRRHEQLHTGIK 626
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 6 KRYSCDICQKRFYDRTKLNRHIDS 77
K ++C C +RF LNRH S
Sbjct: 626 KAFACVTCNQRFARMDALNRHYKS 649
>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 335
Score = 24.6 bits (51), Expect = 9.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 208 PPVIFFLN*NYILPSNSSALILKTRSETSC 297
PP++ LN N + PSN +L+ S C
Sbjct: 208 PPLVSTLNRNELFPSNGPLEVLEILSFLRC 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,975,589
Number of Sequences: 5004
Number of extensions: 38063
Number of successful extensions: 108
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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