Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I16
         (524 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1549 - 27808389-27808524,27809274-27809384,27811248-27811720     29   3.0  
02_04_0194 + 20820985-20821027,20822168-20822367,20822477-208225...    28   5.3  
01_05_0680 - 24238840-24241242                                         28   5.3  
08_01_1059 - 10775143-10776063                                         27   7.0  
09_01_0106 + 1673737-1674522,1674625-1675089                           27   9.2  
06_02_0005 + 10502478-10503446                                         27   9.2  
05_03_0281 + 11560402-11560569,11561373-11561579,11562966-115631...    27   9.2  

>08_02_1549 - 27808389-27808524,27809274-27809384,27811248-27811720
          Length = 239

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 3   EKRYSCDICQKRFYDRTKLNRHIDSH 80
           ++ +SC  C++RFY    L  H ++H
Sbjct: 56  DRAFSCTYCRRRFYSSQALGGHQNAH 81


>02_04_0194 +
           20820985-20821027,20822168-20822367,20822477-20822566,
           20822820-20822825,20822866-20823009,20823089-20823580
          Length = 324

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 3   EKRYSCDI--CQKRFYDRTKLNRHIDSHNDIK 92
           E++Y C    C K+F D +KL RH   H   K
Sbjct: 69  ERQYVCHYAGCDKKFLDSSKLKRHFLIHTGEK 100


>01_05_0680 - 24238840-24241242
          Length = 800

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 1   ARSVTPVTFARRD--STTGRNLTDILTLTMTLKGRGRGRSQKRWM 129
           AR VTP   +R D  + T R+ +    L +  + RG+GR    WM
Sbjct: 135 ARGVTPDAKSRTDLLAVTARSASAADALALLAEMRGKGRPLDAWM 179


>08_01_1059 - 10775143-10776063
          Length = 306

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 12  YSCDICQKRFYDRTKLNRHIDSHNDIKR*GKR 107
           + C+ CQ++FY    L  H ++H   +   KR
Sbjct: 107 FKCNYCQRKFYTSQALGGHQNAHKRERSLAKR 138


>09_01_0106 + 1673737-1674522,1674625-1675089
          Length = 416

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +3

Query: 12  YSCDICQKRFYDRTKLNRHIDSHNDIKR*GKRKITEKMDGL*KSLL 149
           Y C  C   F     L  H+ SHN  +R G +++     G   SL+
Sbjct: 309 YECRKCGTMFSSGQALGWHMKSHNSDERWGDKRVPSAFVGSFLSLI 354


>06_02_0005 + 10502478-10503446
          Length = 322

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +1

Query: 10  VTPVTFARRDSTTGRNLTDILTLTMTLKGRGRGRSQKRWMDSESL 144
           +   T   RD      + D+L      + +GRG   K W+D E++
Sbjct: 160 ILKTTVVDRDEAAAGGVRDVLGDGFMERVKGRGMVTKEWVDQEAV 204


>05_03_0281 +
           11560402-11560569,11561373-11561579,11562966-11563174,
           11563261-11563309,11563611-11563673,11563799-11565472
          Length = 789

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +3

Query: 24  ICQKRFYDRTKLNRHI 71
           IC+++ Y RT+LN+H+
Sbjct: 128 ICEQKLYTRTQLNQHV 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,750,034
Number of Sequences: 37544
Number of extensions: 208019
Number of successful extensions: 510
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)