Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_I16
(524 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g17180.1 68415.m01984 zinc finger (C2H2 type) family protein ... 31 0.63
At5g25160.1 68418.m02983 zinc finger (C2H2 type) family protein ... 30 0.83
At5g10970.1 68418.m01275 zinc finger (C2H2 type) family protein ... 30 0.83
At1g66140.1 68414.m07506 zinc finger (C2H2 type) family protein ... 30 0.83
At1g80730.1 68414.m09472 zinc finger (C2H2 type) family protein ... 30 1.1
At5g64170.1 68418.m08057 dentin sialophosphoprotein-related cont... 29 1.4
At5g57520.1 68418.m07187 zinc finger (C2H2 type) family protein ... 29 2.5
At5g40710.1 68418.m04941 zinc finger (C2H2 type) family protein ... 29 2.5
At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ... 28 3.3
At1g24625.1 68414.m03099 zinc finger (C2H2 type) family protein ... 28 4.4
At4g12240.1 68417.m01941 zinc finger (C2H2 type) family protein ... 27 5.8
At5g60140.1 68418.m07539 transcriptional factor B3 family protei... 27 7.7
At5g24670.1 68418.m02916 cytidine/deoxycytidylate deaminase fami... 27 7.7
At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein ... 27 7.7
At1g74250.1 68414.m08599 DNAJ heat shock N-terminal domain-conta... 27 7.7
>At2g17180.1 68415.m01984 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 270
Score = 30.7 bits (66), Expect = 0.63
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 3 EKRYSCDICQKRFYDRTKLNRHIDSHNDIK 92
E+R+ CD C+K F L H +H D+K
Sbjct: 145 EERFECDGCKKVFGSHQALGGHRATHKDVK 174
>At5g25160.1 68418.m02983 zinc finger (C2H2 type) family protein
(ZFP3) identical to zinc finger protein, ZFP3
gi|790677|gb|AAA87299; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 235
Score = 30.3 bits (65), Expect = 0.83
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 3 EKRYSCDICQKRFYDRTKLNRHIDSHNDIKR*GKR 107
+K +SC+ CQ+ FY L H ++H + KR
Sbjct: 58 QKLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKR 92
>At5g10970.1 68418.m01275 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type domain, Prosite:PS00028
Length = 272
Score = 30.3 bits (65), Expect = 0.83
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 3 EKRYSCDICQKRFYDRTKLNRHIDSHNDIKR*GKR 107
+K +SC+ CQ+ FY L H ++H + KR
Sbjct: 101 QKLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKR 135
>At1g66140.1 68414.m07506 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 260
Score = 30.3 bits (65), Expect = 0.83
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 12 YSCDICQKRFYDRTKLNRHIDSHNDIKR*GKRKITEKMDGL 134
+SC+ CQ++FY L H ++H + KR + + G+
Sbjct: 85 FSCNYCQRKFYSSQALGGHQNAHKRERTLAKRAMRMGLAGV 125
>At1g80730.1 68414.m09472 zinc finger (C2H2 type) family protein
(ZFP1) identical to zinc finger protein, ZFP1
gi|790673|gb|AAA87297; contains zinc finger, C2H2 type,
domain, Prosite:PS00028
Length = 228
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 12 YSCDICQKRFYDRTKLNRHIDSHNDIKR*GKRKITEKM 125
+SC+ CQ++FY L H ++H + KR KM
Sbjct: 68 FSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQYYKM 105
>At5g64170.1 68418.m08057 dentin sialophosphoprotein-related
contains weak similarity to Swiss-Prot:Q9NZW4 dentin
sialophosphoprotein precursor [Homo sapiens]
Length = 566
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 92 KVGEEEDHRKDGWTLKVSAWNESECDTEMMNDI 190
K+G E DHRK L+ S S C + +++DI
Sbjct: 395 KIGLENDHRKAATELETSNMQGSSCVSSVVDDI 427
>At5g57520.1 68418.m07187 zinc finger (C2H2 type) family protein
(ZFP2) identical to zinc finger protein 2 (ZFP2)
GI:790674 from [Arabidopsis thaliana]; contains Pfam
domain, PF00096: Zinc finger, C2H2 type
Length = 150
Score = 28.7 bits (61), Expect = 2.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 12 YSCDICQKRFYDRTKLNRHIDSH 80
+SC+ CQ++FY L H ++H
Sbjct: 52 FSCNYCQRKFYSSQALGGHQNAH 74
>At5g40710.1 68418.m04941 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 272
Score = 28.7 bits (61), Expect = 2.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 12 YSCDICQKRFYDRTKLNRHIDSHN 83
+ C C+K FY+ L++H DS +
Sbjct: 107 WRCGFCKKAFYEEKYLDKHFDSRH 130
>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 387
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +3
Query: 3 EKRYSCDI--CQKRFYDRTKLNRHIDSH 80
E++Y CD C K+F D +KL RH H
Sbjct: 105 ERQYVCDQEGCGKKFLDSSKLKRHYLIH 132
>At1g24625.1 68414.m03099 zinc finger (C2H2 type) family protein
(ZFP7) identical to zinc finger protein, ZFP7
gi|790685|gb|AAA87303; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 209
Score = 27.9 bits (59), Expect = 4.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 12 YSCDICQKRFYDRTKLNRHIDSHNDIKR*GKR 107
+SC+ C+++FY L H ++H + KR
Sbjct: 59 FSCNYCRRKFYSSQALGGHQNAHKRERTMAKR 90
>At4g12240.1 68417.m01941 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 364
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +3
Query: 12 YSCDICQKRFYDRTKLNRHIDSHNDIKR*GKRKITEKMDG 131
Y C +C +RFY KL H ++ + + + E G
Sbjct: 117 YFCGVCDRRFYTNEKLINHFKQIHETENQKRMRQIESSKG 156
>At5g60140.1 68418.m07539 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 328
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 101 EEEDHRKDGWTLKVSAWNESECDTEMMNDI*RYIEPH 211
E++D +DG+ K E E D E +D RY++ H
Sbjct: 194 EDDDEAEDGYDAKDDDGLEDEDDLEDEDDERRYLDDH 230
>At5g24670.1 68418.m02916 cytidine/deoxycytidylate deaminase family
protein similar to SP|Q9URQ3 tRNA-specific adenosine
deaminase 3 (EC 3.5.4.-) (tRNA-specific adenosine-34
deaminase subunit TAD3) {Saccharomyces cerevisiae};
contains Pfam profile PF00383: Cytidine and
deoxycytidylate deaminase zinc-binding region
Length = 432
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 170 TEMMNDI*RYIEPHPLSSFLTKTTFCPQIRPL 265
++M D+ R ++P+ LS F+T+ + I PL
Sbjct: 87 SDMPPDVQRLVDPYELSPFITQVGYFSLISPL 118
>At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 516
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +3
Query: 9 RYSCDICQKRFYDRTKLNRHIDSHN 83
R+ CD+C K F L H HN
Sbjct: 82 RFICDVCNKGFQREQNLQLHRRGHN 106
>At1g74250.1 68414.m08599 DNAJ heat shock N-terminal
domain-containing protein contains Pfam domains PF00226:
DnaJ domain and PF00096: Zinc finger, C2H2 type
Length = 630
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = +3
Query: 18 CDICQKRFYDRTKLNRHI-DS-HNDIK 92
CD C + F RTKL++H+ DS H +K
Sbjct: 602 CDRCGEEFESRTKLHKHLADSGHATVK 628
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,034,605
Number of Sequences: 28952
Number of extensions: 188323
Number of successful extensions: 561
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -