Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I14
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   1.5  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    26   2.7  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    26   3.5  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   4.7  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   4.7  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   4.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   6.2  
SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|...    25   6.2  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   6.2  
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    25   6.2  
SPBC4F6.15c |swi10|rad23|DNA repair endonuclease|Schizosaccharom...    25   8.2  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   8.2  
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ...    25   8.2  

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 277 SPLHASSPGLPPAH 236
           SPLHA+S  LPP+H
Sbjct: 43  SPLHANSVSLPPSH 56


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 313 VLPTSYMRGPPESPLHASSPGLPPAHSCSLVITSASPP 200
           + P++Y+R   +S + A  P  PP  +     +S++PP
Sbjct: 188 IFPSNYVRLLEDSAVKAQPPPPPPQQNYPPAASSSAPP 225


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 405 VCTRKRSYIRRGCSLCRNISVRN*QIQPLRKC 310
           V TR+R  + R C +CR   ++   ++P + C
Sbjct: 20  VATRRRR-VTRACDMCRRKKIKCDGLRPCKNC 50


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -1

Query: 428 YYCTSYPWYVLVNVRIYAGDVPCAAIFRSVTDRSNHYESVTHFIHEGSTG 279
           +YC +  W   +N   Y G +  A +F+S+   S  Y+   + +   S G
Sbjct: 524 WYCLARSWERYINDPAYIGSMAFAFLFQSLIIGSIFYDMKLNTVDVFSRG 573


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 327  GSVSYGPKYCGTRNIPGVYTNVYEYIPWIRSTII 428
            G+VS    YC   + PG  + V+  IP+  S+ +
Sbjct: 1072 GNVSLTVGYCSAEHGPGSTSKVFSRIPYSASSTV 1105


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 26/82 (31%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
 Frame = -2

Query: 382  YTPGMFLVPQYFGP*LTDPTITKVLPTSYMRGPPESPLHASSPGLPPAHSCSLVITSA-- 209
            Y P    VP    P    P++T  LP    R PP S      P  PP  S +L  +SA  
Sbjct: 1033 YEPPTVSVPS---PSALSPSVTPQLPPVSSRLPPVSATRPQIPQPPPV-STALPSSSAVS 1088

Query: 208  SPPRNVLCAA*HLSLSTYGSLT 143
             PP          + ST   LT
Sbjct: 1089 RPPIATSAGRSSTAASTSAPLT 1110


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -2

Query: 343  P*LTDPTITKVLPTSYMRGPPESPLHASSPG--LPPAHSCSLVITSASPP 200
            P + +  +  ++P S  + PP S   A++P   LPP+ S    + S +PP
Sbjct: 1487 PAVPNVPVPSMIP-SVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPP 1535


>SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +3

Query: 15  PICLPSLDYTQQPPADFEMYVAGWGMYKQF--ISGTGLSSTVKQHVKLPYVDR 167
           P C  S  YT Q   +  +    WG+ + F    G      V + VK P V++
Sbjct: 58  PPCTFSRSYTDQKRKEIHLGSTEWGLKESFTLTRGPNRRGNVGKGVKRPMVNK 110


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 447 CSHYSRLLLYFLSMVCTRKRSY 382
           CS    LL+ FL+MVC+ K  Y
Sbjct: 872 CSDVLYLLMEFLNMVCSPKSYY 893


>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 3   DFVRPICLPSLDYTQQPPADFEMYVAGW 86
           +FV P CL  + +T+     F ++VA W
Sbjct: 57  EFVGPDCLRGIYFTEPISQCFVLHVANW 84


>SPBC4F6.15c |swi10|rad23|DNA repair
           endonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 329 ICQLRTEILRHKEHPRRIYERLRVHTMDKKYN 424
           IC L   +  H  HP  IY   R+  + K YN
Sbjct: 78  ICSLFLSLKYHHLHPEYIYS--RISKLGKSYN 107


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 104  ELLVHSPTGDVHFKICRGL 48
            ELL+    G+ H+ +CRGL
Sbjct: 1701 ELLLRMEDGNYHWHLCRGL 1719


>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 358

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 477 YNFTKEITPPCSHYSRLLLYFLSMVCTRKRSYI 379
           Y+      PP +    LL +FLS V T+   Y+
Sbjct: 282 YDLLSHCIPPTTILKELLSFFLSKVDTKLHPYL 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,590
Number of Sequences: 5004
Number of extensions: 50849
Number of successful extensions: 167
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)