Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_I13
(576 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g29965.1 68414.m03664 60S ribosomal protein L18A (RPL18aA) JRW 188 2e-48
At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB) 188 2e-48
At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC) si... 183 9e-47
At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containi... 32 0.24
At4g02400.1 68417.m00324 U3 ribonucleoprotein (Utp) family prote... 30 0.96
At2g35200.1 68415.m04317 expressed protein 30 0.96
At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1 fam... 28 3.9
At5g49770.1 68418.m06164 leucine-rich repeat transmembrane prote... 28 5.1
At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like fami... 27 6.8
At1g26870.1 68414.m03277 no apical meristem (NAM) family protein... 27 6.8
At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family prote... 27 9.0
At5g04700.1 68418.m00478 hypothetical protein 27 9.0
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 27 9.0
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 27 9.0
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 27 9.0
>At1g29965.1 68414.m03664 60S ribosomal protein L18A (RPL18aA) JRW
Length = 178
Score = 188 bits (459), Expect = 2e-48
Identities = 84/172 (48%), Positives = 121/172 (70%), Gaps = 3/172 (1%)
Frame = +2
Query: 2 LKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKE 181
L +Y+V+GR LP+E + +P +Y+M++++ + ++AKS+FWY+LR+ KK KK+ G++++I E
Sbjct: 6 LHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAINE 65
Query: 182 IPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQI 361
I EK+P IKNFGIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQI
Sbjct: 66 IFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQI 125
Query: 362 IKVEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYKRLNTFAYKRPSTY 508
IK + A+ C+R KQFH SKI FPL R K TF +P+ +
Sbjct: 126 IKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLF 177
>At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)
Length = 178
Score = 188 bits (458), Expect = 2e-48
Identities = 80/146 (54%), Positives = 111/146 (76%)
Frame = +2
Query: 8 EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIP 187
+Y+V+GR LP+E + +P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G++++I EI
Sbjct: 8 QYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIY 67
Query: 188 EKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK 367
EK+P IKNFGIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQIIK
Sbjct: 68 EKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIK 127
Query: 368 VEVIKAAACRRPQVKQFHTSKIGFPL 445
+ A C+R KQFH SKI FPL
Sbjct: 128 TATVPAKLCKRESTKQFHNSKIKFPL 153
>At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC)
similar to GB:CAA08791 from [Podocoryne carnea]
Length = 178
Score = 183 bits (445), Expect = 9e-47
Identities = 77/146 (52%), Positives = 109/146 (74%)
Frame = +2
Query: 8 EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIP 187
+Y+V+GR LP+E++ P +Y+M+++ + + AKS+FWYF+R+LKK KK+ G++++I EI
Sbjct: 8 QYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAINEIF 67
Query: 188 EKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK 367
EK+P IKN+GIWLRY+SR+G HNMY+EYRD ++ G V Q Y +M +RHR R IQIIK
Sbjct: 68 EKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIK 127
Query: 368 VEVIKAAACRRPQVKQFHTSKIGFPL 445
+ A C+R KQFH SKI FPL
Sbjct: 128 TATVPAKLCKREITKQFHNSKIKFPL 153
>At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 867
Score = 32.3 bits (70), Expect = 0.24
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 53 KPPLYKMRIFSPDPIVAKSRFWYFL-RQLKKFKKTTGEIVSIKEIPEKSPV 202
+PP++ R +P PI +++RF + Q + +T E +S E P K+ V
Sbjct: 11 RPPIFLHRFINPKPISSQTRFLHPPDNQSRDISDSTTETISTLEFPHKTSV 61
>At4g02400.1 68417.m00324 U3 ribonucleoprotein (Utp) family protein
contains Pfam profile: PF04615 Utp14 protein
Length = 858
Score = 30.3 bits (65), Expect = 0.96
Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +2
Query: 134 LKKFKKTTGEIVSIKEIPE-KSPVKIKNFGIWLRYESRSGVHN-MYREYRD 280
+++F+K E+++ +E+PE + PV + +G W + + G+ + M RE+ D
Sbjct: 679 VEEFEKDKQEVLN-QEVPEPEKPVLVPGWGQWTNVQKKRGLPSWMVREHED 728
>At2g35200.1 68415.m04317 expressed protein
Length = 201
Score = 30.3 bits (65), Expect = 0.96
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 77 IFSPDPIVAKSRFWYFLRQLKKFKKT 154
+FSP P+ +K WYF +K F+++
Sbjct: 160 LFSPTPVTSKGNGWYFPSPIKVFRQS 185
>At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1 family
protein similar to PHO1 protein [Arabidopsis thaliana]
GI:20069032; contains Pfam profiles PF03105: SPX domain,
PF03124: EXS family
Length = 784
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 204 LTGLFSGISLMDTISPVVFLNFFNCLKKYQK 112
LT LF G++ + T + L F N LKK+ K
Sbjct: 293 LTELFKGLNYLKTYRNLNILAFMNILKKFDK 323
>At5g49770.1 68418.m06164 leucine-rich repeat transmembrane protein
kinase, putative
Length = 946
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -3
Query: 217 KVLNLNRTLFWNFLDGYNFTSSLFELLQLPQEIPETRFCHNRIRRENP 74
K+ + TL DG FT S+ E L L Q + R NR+ + P
Sbjct: 215 KLFSSEMTLLHVLFDGNQFTGSIPESLGLVQNLTVLRLDRNRLSGDIP 262
>At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like family
protein contains Pfam profile PF04091: Exocyst complex
subunit Sec15-like
Length = 771
Score = 27.5 bits (58), Expect = 6.8
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
Frame = +2
Query: 26 RKLPSESEPKPPLYKMRIF-----SPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIPE 190
RK +P+ L+ ++ F S V K+ + F+ + K ++ S+K
Sbjct: 45 RKTFGTGKPETLLHHLKFFARSKESEIEEVCKAHYQDFIHAVDDLKSLLSDVESLKSALS 104
Query: 191 KSPVKIKNFGIWLRYESRSGVH-NMYREYRDLSVGGAVTQCYRDMGARHRARAH 349
S K+++ L S V + DL++G AVT C R M RA H
Sbjct: 105 DSNSKLQSVAAPLLSSLDSLVEAQTVSKNVDLAIG-AVTHCVRVMELVSRANQH 157
>At1g26870.1 68414.m03277 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to GB:AAD22369, NAM stands for No Apicla
Meristem
Length = 425
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = +2
Query: 29 KLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTT 157
+LPS SEP PP R F D V+ + W R KK TT
Sbjct: 149 RLPSLSEPSPP--SKRFF--DSPVSPNDSWAICRIFKKTNTTT 187
>At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family protein
contains Pfam profile: PF04615 Utp14 protein
Length = 822
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +2
Query: 143 FKKTTGEIVSIKEIPE-KSPVKIKNFGIWLRYESRSGV-HNMYREYRD 280
F+K E+++ +E+PE + PV++ +G W +++ G+ + RE+ +
Sbjct: 665 FEKDKQEVLN-QEVPEPEKPVQVAGWGHWTNNQNKRGLPSRIVREHEE 711
>At5g04700.1 68418.m00478 hypothetical protein
Length = 669
Score = 27.1 bits (57), Expect = 9.0
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Frame = +2
Query: 158 GEIVS-IKEIPEKSPVKIKNFGIWLRY-ES-------RSGVHNMYREYRDLSVG---GAV 301
G+ VS IKE+PE+ V I + + ES R N+Y EY LS G G V
Sbjct: 34 GDSVSPIKEVPEEEEVPNDPVNIQIPFIESALSTSRLRGKNTNVYYEYIQLSQGISQGRV 93
Query: 302 TQCYRDMGARHRARAHS-IQIIKVEVIKAAACRRPQV 409
+ +D H I + + ++KA AC +P++
Sbjct: 94 -EIVKDFLNHHPDSVDEWINLYETPLLKACACGKPEI 129
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 429 LLVWNCLTCGRRHAAALITSTLMIC 355
L+VWN LT + HA L + +M C
Sbjct: 89 LIVWNALTSQKTHAIKLPCAWVMTC 113
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 429 LLVWNCLTCGRRHAAALITSTLMIC 355
L+VWN LT + HA L + +M C
Sbjct: 27 LIVWNALTSQKTHAIKLPCAWVMTC 51
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 429 LLVWNCLTCGRRHAAALITSTLMIC 355
L+VWN LT + HA L + +M C
Sbjct: 89 LIVWNALTSQKTHAIKLPCAWVMTC 113
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,553,876
Number of Sequences: 28952
Number of extensions: 260666
Number of successful extensions: 786
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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