Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_I12
(570 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||... 57 2e-09
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 33 0.022
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch... 31 0.090
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 29 0.63
SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 28 1.1
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S... 27 1.5
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 27 1.5
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 26 3.4
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 26 4.5
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 25 5.9
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 25 5.9
SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr ... 25 5.9
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as... 25 5.9
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 25 7.8
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces... 25 7.8
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 25 7.8
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c... 25 7.8
>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 295
Score = 57.2 bits (132), Expect = 2e-09
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 7/66 (10%)
Frame = +1
Query: 361 AKGKTLNDEDTLKSLNIQNGYKLYVKDLGPQISWKNVFLAEYAGPLFVYL-------WVY 519
A G TL TL+ + G ++VKDLGPQI W+ VF+ EY GPL ++L W+Y
Sbjct: 50 ADGTTLLPNTTLRKYGVGPGATIWVKDLGPQIGWRTVFMIEYLGPLVIHLFFILNYKWIY 109
Query: 520 PRAWDL 537
+ ++L
Sbjct: 110 RKDYNL 115
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 33.5 bits (73), Expect = 0.022
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = +1
Query: 259 IQLNEESTIKNVKEKIHSSVKTSLYPDRQAIKLEAKGKTLNDEDTLKSLNIQNGYKLY-V 435
+ ++ ES++ +KE I + + +RQ +L G+ L DE++LK+ IQ+G+ ++ V
Sbjct: 18 VTVDSESSVLALKEAI--APVADIEKERQ--RLIYAGRVLKDEESLKTYKIQDGHSIHLV 73
Query: 436 KDLG 447
K LG
Sbjct: 74 KTLG 77
>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 31.5 bits (68), Expect = 0.090
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = -2
Query: 434 TYSLYPFCMFKDFRVSSSFKVLPLASNLIACRSGYNEVFTLEWIFSFTFFI 282
T Y F +D + S + LP S C S Y E F LEW+ + TF I
Sbjct: 366 TVKYYNFLKKQDDSILSQYHYLPSTS----CISDYGETFLLEWMKTNTFRI 412
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 28.7 bits (61), Expect = 0.63
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +1
Query: 289 NVKEKIHSSVK-TSLYP--DRQAIKLEAKGKTLNDEDTLKSLNIQNGYK 426
+ KE+ VK S+YP + ++ +E GK+L D D+L L + N K
Sbjct: 383 SAKEEESDKVKGESVYPKPESESYDVEMNGKSLEDSDSLSELYLTNEEK 431
>SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 206
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +1
Query: 244 KPLGKIQLNEESTIKNVKEKIHSSVKTSLYPDRQAIKLEAKGKTLNDED 390
KP K N E KN E YP +++K G T+ DE+
Sbjct: 27 KPRKKNLGNNEWRFKNAGEYFDEDNNEEEYPSLESLKTVGNGDTIQDEE 75
>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 27.5 bits (58), Expect = 1.5
Identities = 17/68 (25%), Positives = 31/68 (45%)
Frame = +1
Query: 256 KIQLNEESTIKNVKEKIHSSVKTSLYPDRQAIKLEAKGKTLNDEDTLKSLNIQNGYKLYV 435
K +LN K+V+E + K + E++GKT ++ L ++N KL+
Sbjct: 38 KKELNSNLNEKSVEESSKNETKEQFNSSSIPRESESEGKTASNTSPLSPKKVENLSKLF- 96
Query: 436 KDLGPQIS 459
D+ +S
Sbjct: 97 NDINEDVS 104
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 27.5 bits (58), Expect = 1.5
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = +1
Query: 256 KIQLNEESTIKNVKEKIHSSVKTSLYPDRQAIKLEAKGKT--LNDEDTLKSLN 408
KI +N+ES++ + +EKI S ++ L P +K + G T L+++ KSL+
Sbjct: 235 KIMINKESSLFDSQEKIDSQLEKFLQP----LKYDEIGSTQILDEQSVEKSLS 283
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 26.2 bits (55), Expect = 3.4
Identities = 17/68 (25%), Positives = 34/68 (50%)
Frame = +1
Query: 109 RYLILISCASISKIEIVYLFRRVIDFKFSG*FTIMEIEILSVAGSKPLGKIQLNEESTIK 288
RY+++ +C SI KI L + KFS +E+L + + + +++ ++K
Sbjct: 525 RYIVIGTCHSIEKIPYEILSESFFELKFSELEMDERLELLKIYAN----NVIIDKRISLK 580
Query: 289 NVKEKIHS 312
+V K +S
Sbjct: 581 DVALKTNS 588
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 25.8 bits (54), Expect = 4.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 559 SRSLFSNKDPRPLGKPKGIRIMARHIQPKIRSSK 458
S ++F N+ P K + +++ HI+ KIR S+
Sbjct: 541 SNTMFENELPDSFFKVEDVKVDIHHIKLKIRKSR 574
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 5.9
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +3
Query: 153 NCLLIQTCNRFQIFWIIYNNGDRNFKRCW--FQTSRKNS 263
+C +I +FQ F+ N R +RCW F+ + NS
Sbjct: 563 HCGIIDITEKFQDFFTQLNLSPRIERRCWVLFREYKSNS 601
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 5.9
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +1
Query: 220 EILSVAGSKPLGKIQLNEESTIKNVKEKIHSSVKTSLYPDRQAIKLEAKGKTL 378
++ AGS IQ+N+E + + + SS+K +++ + + G+TL
Sbjct: 201 DLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTL 253
>SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 200
Score = 25.4 bits (53), Expect = 5.9
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +1
Query: 262 QLNEESTIKNVKEKIHSSVKTSLYPDRQAIKLEAKGKTLNDEDTLKSL 405
+L+ ++ IKN +EK H L + +K + K+ ND D + ++
Sbjct: 91 KLHLKTIIKNYEEKEHIYTALPLVSKEEFLKEHPEFKSSNDHDLMLAI 138
>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
associated subunit Sfc1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 25.4 bits (53), Expect = 5.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 127 SCASISKIEIVYLFRRVIDFKFS 195
S ++S+I V+LFR + DF++S
Sbjct: 86 SVQNVSRIRQVFLFRDMADFQYS 108
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 25.0 bits (52), Expect = 7.8
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 295 KEKIHSSVKTSLYPDRQAIKLEAKGKTLNDEDT 393
K ++HS ++ Y ++I + KG ++N E+T
Sbjct: 599 KAEMHSWIEAIQYSISESIVQKGKGTSMNSEET 631
>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 25.0 bits (52), Expect = 7.8
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +2
Query: 473 FWLNMPGHYSY 505
FWL+ GHYSY
Sbjct: 462 FWLSWSGHYSY 472
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 25.0 bits (52), Expect = 7.8
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = +1
Query: 244 KPLGKIQLNEESTIKNVKEKIHSSVKTS 327
KP+GK++ E+ K++ + + SS+++S
Sbjct: 343 KPVGKLEKKFENLEKSIGDTLKSSIRSS 370
>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 25.0 bits (52), Expect = 7.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 370 KTLNDEDTLKSLNIQNGYKLYVK 438
K DED LKS I++ Y +YVK
Sbjct: 202 KKYGDEDQLKSNPIRHLYDVYVK 224
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,397,431
Number of Sequences: 5004
Number of extensions: 51077
Number of successful extensions: 141
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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