Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I12
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0335 - 2706916-2706984,2707062-2707825,2710014-2710053,271...    40   0.001
07_01_0450 - 3395644-3395837,3396164-3396190,3396266-3396396,339...    29   2.6  
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774...    28   4.6  
08_01_0233 + 1876940-1877509,1907940-1908195,1908290-1908589,190...    28   4.6  
03_06_0501 - 34380155-34380637,34380961-34381029,34382206-343822...    28   4.6  
03_03_0045 - 14029375-14029400,14029515-14029547,14030407-140304...    28   4.6  

>01_01_0335 -
           2706916-2706984,2707062-2707825,2710014-2710053,
           2710105-2710173,2710268-2710336
          Length = 336

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
 Frame = +1

Query: 253 GKIQLNEESTIKNVKEKIHSSVKTSLYPDRQAIKLEAK-GKT-----LNDEDTLKSLNIQ 414
           G ++   ++ + ++++ I++  K   YP RQ + L  + GK+     L+ + +L     +
Sbjct: 39  GGLRSRGKAKVADLQDAIYAKTK-KYYPARQRLTLPIQPGKSGKPVVLSAKASLSEYCEK 97

Query: 415 NGYKLYV--KDLGPQISWKNVFLAEYAGPLFVYLWVY 519
               L V  KDLGPQ+ +  +F  EY GPL +Y   Y
Sbjct: 98  GSGSLTVVFKDLGPQVFYSTLFFFEYLGPLLIYPMFY 134


>07_01_0450 -
           3395644-3395837,3396164-3396190,3396266-3396396,
           3396612-3396691,3397283-3397345,3397588-3397697,
           3398316-3398424,3398783-3398857,3399363-3399459,
           3399622-3399683,3399966-3400026,3400330-3400469,
           3400747-3400839,3401345-3401393,3401534-3401634,
           3401723-3401816,3401904-3402139
          Length = 573

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +1

Query: 376 LNDEDTLKSLNIQNGYKLYVKDLGPQISWKNVFLAEYAGPLFVYLWVYP-RAWDLYWRTN 552
           LN    +KSL++++   + V+   P + W  + L EY  P  ++  + P +AW  YWR  
Sbjct: 194 LNRSQKIKSLHVED-MDVVVE---PGVGW--IELNEYLKPYGLFFPLDPGKAWGHYWRNV 247

Query: 553 FYS 561
            YS
Sbjct: 248 CYS 250


>11_04_0007 -
           12074472-12074538,12074908-12075116,12077202-12077463,
           12077547-12078043,12078651-12078719,12079258-12079363,
           12080272-12080295,12081184-12081242,12081383-12081520
          Length = 476

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 265 LNEESTIKNVKEKIHSSVKTSLYPDRQAIKL 357
           +NEE+ I  V E +   VK + +PD + +++
Sbjct: 329 INEEAEISEVTEAVKQQVKDAKFPDIEVVRM 359


>08_01_0233 +
           1876940-1877509,1907940-1908195,1908290-1908589,
           1908777-1908939,1908958-1908994,1910122-1910742
          Length = 648

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = +1

Query: 238 GSKPLGKIQLNEESTIKNVKEKIHSSV---KTSLYPDRQAIKLEAKGKTLNDEDTLKSLN 408
           G++ +GK+  NE+ T    KEK    V   K+ L P  +    E +  T  +E  LK L+
Sbjct: 282 GNEEMGKVNCNEKHTYGEEKEKEKEKVVETKSELKPKPRRKNWEEEELTW-EEKVLKVLH 340

Query: 409 IQNGYKLYVKDLGPQISW 462
           +   ++  V +  P++ W
Sbjct: 341 MVRIWE--VTEFDPKMEW 356


>03_06_0501 -
           34380155-34380637,34380961-34381029,34382206-34382229,
           34382622-34382786
          Length = 246

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +1

Query: 337 DRQAIKLEAKGKTLNDEDTLKSLNIQNGYKLYVKDLGPQISWKNVFLAEYAG 492
           D QA+  E +G +  +   L++LN++  ++  +KD+   IS K +   E AG
Sbjct: 170 DGQALA-EKEGLSFLETSALEALNVEKAFQTILKDIHQIISKKALAAQEAAG 220


>03_03_0045 -
           14029375-14029400,14029515-14029547,14030407-14030446,
           14030527-14030736
          Length = 102

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = +1

Query: 208 IMEIEILSVAGSKPLGKIQLNEESTIKNVKEKIHSSVKTSLYPDRQAIKLEAKGKTLNDE 387
           +M+   + V  +K    IQ +   T  ++K+K+HS V      ++Q I L      L+D 
Sbjct: 5   LMQAMYIRVKRNKTTYFIQCDPTETTLSIKQKLHSLVDQP-PGNQQLILLATTEVVLDDS 63

Query: 388 DTLKSLNIQN 417
            TL    ++N
Sbjct: 64  KTLADQKVEN 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,882,824
Number of Sequences: 37544
Number of extensions: 266708
Number of successful extensions: 606
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)