Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I12
         (570 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)                     40   0.001
SB_45931| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.12 
SB_33276| Best HMM Match : Glyco_transf_43 (HMM E-Value=0)             31   0.66 
SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)        31   0.88 
SB_30310| Best HMM Match : Y_phosphatase (HMM E-Value=0)               29   2.0  
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_29369| Best HMM Match : GIY-YIG (HMM E-Value=0.56)                  28   4.7  
SB_18427| Best HMM Match : Peptidase_C54 (HMM E-Value=1.3)             28   4.7  
SB_50345| Best HMM Match : Cadherin (HMM E-Value=0)                    28   6.2  
SB_20001| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_269| Best HMM Match : ubiquitin (HMM E-Value=1.2e-09)               28   6.2  
SB_37669| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_52587| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2)            27   8.2  

>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 1023

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 20/52 (38%), Positives = 30/52 (57%)
 Frame = +1

Query: 256 KIQLNEESTIKNVKEKIHSSVKTSLYPDRQAIKLEAKGKTLNDEDTLKSLNI 411
           K+++ E+ T+  +K+KI +      YP    IKL   GK LND++ LK  NI
Sbjct: 80  KVEIGEDETVLKLKQKIEADKGKDAYPHGN-IKLIYAGKILNDDNPLKEYNI 130


>SB_45931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +1

Query: 472 FLAEYAGPLFVYLWVYPRAWDLY 540
           F+AEYAGPL VYL++Y R   +Y
Sbjct: 2   FMAEYAGPLAVYLFLYARPSFIY 24


>SB_33276| Best HMM Match : Glyco_transf_43 (HMM E-Value=0)
          Length = 1182

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +1

Query: 286 KNVKEKIHSSVKTSL-Y-PDRQAIKLEAKGKTLNDEDTLKSLNIQNGYKL 429
           +N+K  I  S + S+ Y P  + + ++  GKT  D+  L SLN++ G K+
Sbjct: 735 RNMKYDIRVSARNSMGYGPPSKVVSVKYTGKTPTDDIKLSSLNLKQGAKI 784


>SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)
          Length = 1709

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
 Frame = +1

Query: 241  SKPLGKIQLNEESTIKNVKEK----IHSSVKTSLYPDRQAIKLEAKGKTLNDEDT--LKS 402
            +K +G +Q NEE T+++VKE     +    K S   + Q  +L+ K + L DE+     S
Sbjct: 1038 TKKIGSVQENEEGTLESVKESNSNILQEKKKQSDEFNFQVAELKEKVQALEDENRKGASS 1097

Query: 403  L-NIQNGYKLYVKDLGPQI 456
            L +I+  Y+L + +L   I
Sbjct: 1098 LDDIKVKYELLIANLKDDI 1116


>SB_30310| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 990

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
 Frame = +1

Query: 256 KIQLNEESTIKNVKEKIH----SSVKTSLYPDRQAIKLEAKGKTLNDEDTLKSLNIQNGY 423
           +++ NEE   KN  +K +    + +   +Y +R+A  +++   TL D   +KSL +++ Y
Sbjct: 40  RLRSNEEYNQKNGYDKGYLDRRNDIPKRVYENREA-NVDSSEPTLEDRTLIKSLPLKDIY 98

Query: 424 KLYVKDLG 447
             Y  +LG
Sbjct: 99  NDYRSELG 106


>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 467 TYFWLNMPGHYSYTFGFTQGPGI 535
           T+F  ++PGHY  T   T GPG+
Sbjct: 420 THFRAHVPGHYPLTHFRTHGPGV 442


>SB_29369| Best HMM Match : GIY-YIG (HMM E-Value=0.56)
          Length = 785

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 216 DRNFKRCWFQTSRKNSVK-*RIYYKECKRK 302
           DRNF R W+  SR  + K  ++  +EC RK
Sbjct: 140 DRNFNRQWYFISRNAATKHLKLLTRECNRK 169


>SB_18427| Best HMM Match : Peptidase_C54 (HMM E-Value=1.3)
          Length = 535

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 216 DRNFKRCWFQTSRKNSVK-*RIYYKECKRK 302
           DRNF R W+  SR  + K  ++  +EC RK
Sbjct: 139 DRNFNRQWYFISRNAATKHLKLLTRECNRK 168


>SB_50345| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 1021

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 23/96 (23%), Positives = 43/96 (44%)
 Frame = +1

Query: 88   IVVRSCNRYLILISCASISKIEIVYLFRRVIDFKFSG*FTIMEIEILSVAGSKPLGKIQL 267
            IVV  C+ + +LI C       + ++  R    +     T      L VA  +   + ++
Sbjct: 796  IVVVLCSVFGLLIFCG------VAFILYRCHRKRSQSVKTPQRKSTLPVAPRESYTEPEI 849

Query: 268  NEESTIKNVKEKIHSSVKTSLYPDRQAIKLEAKGKT 375
            + E+ IK  K K++S    ++YP  + +    +GKT
Sbjct: 850  SREAAIKASK-KMYSQATINMYPSNEMLDTVGRGKT 884


>SB_20001| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 722

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
 Frame = -3

Query: 547 FSNKDPRPL-GKPKGIRIMARHIQPKIR-----SSKIFVG 446
           +SN+DPRPL  +P G  I A + Q ++      S K+F G
Sbjct: 530 YSNRDPRPLRPRPVGDSIQAEYSQNRVHFHSYLSGKVFQG 569


>SB_269| Best HMM Match : ubiquitin (HMM E-Value=1.2e-09)
          Length = 414

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = +1

Query: 262 QLNEESTIKNVKEKIHSSVKTSLYPDRQAIKLEAKGKTLNDEDTLKSLNIQNGYKLY--V 435
           Q++E   I  VK  +   +   +  +RQ  +L  KGKTL D+ +L    I +G KLY  +
Sbjct: 119 QVSETEPILAVKTLVAQELDVQV--ERQ--RLVYKGKTLADDCSLDEYLIGDGSKLYLSI 174

Query: 436 KDLGPQ 453
           K L  Q
Sbjct: 175 KKLSSQ 180


>SB_37669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 452 CGPKSLTYSLYPFCMFKDFRVSSSFKVLPLASNLIACRSGYNE 324
           CGPK+L  +L P   F+ F  S   +++   +N+ A +   +E
Sbjct: 46  CGPKNLPGNLSPLSFFELFFKSEVIELIVTETNMYAVQCNTDE 88


>SB_52587| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2)
          Length = 237

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +1

Query: 271 EESTIKNVKEKIHSSVKTSLYPDRQAIKLEAKGKTLNDEDTLKSLNIQNGYKLYVK 438
           E+  I  + EK     +  L P  + +     GK+LN+ D     NI+    LY+K
Sbjct: 169 EQQFIDQILEKNDLYERERLSPRGERLSPRESGKSLNNNDEFSQDNIKELKMLYLK 224


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,861,289
Number of Sequences: 59808
Number of extensions: 335537
Number of successful extensions: 754
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)