Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I11
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    29   0.46 
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    29   0.46 
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   5.7  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   7.5  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    25   10.0 
SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar...    25   10.0 
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    25   10.0 

>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 93  LNIVIPGPQYPPTKGEVWPKPQIQVKD 173
           +N V PGP Y P     +PK +I++ D
Sbjct: 217 VNAVAPGPIYTPLVSSTFPKEKIELSD 243


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -2

Query: 554 IVCKIEELRPSFQASYNAPYRCACHSSGRCDGQVVAFIHAKVRELLA-RCSQFHVQLLNC 378
           +V     LRP  Q ++  PY    ++ G    Q VA ++   + ++A R S  H +L + 
Sbjct: 315 LVTPAGRLRPHGQPNFEVPYTAYIYTRGSITKQPVACLNGFKKPVIAVRFSPIHYELNSF 374

Query: 377 PLESFIVCSF 348
              SF   SF
Sbjct: 375 SNFSFTSVSF 384


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 19  FSYFISICYGIYYCLVCMA 75
           F +FI   YG Y CL+ +A
Sbjct: 104 FIFFIEFSYGTYLCLIQLA 122


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 435 QSKGASRTVQSVPRATPELSLGIVHRLQLHHPNSCTDFLNS 313
           + K +S  + SVP A  +  +G+ +   L   N+ ++ LNS
Sbjct: 775 EDKLSSHLLDSVPNALRQAPIGLKNTNNLSERNASSNLLNS 815


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +3

Query: 162 QVKDDKYYTFDPAVFTVKEPFQKCDFLTK--ALERYQFLVRDLHRIT 296
           + ++ K  + DP +FT++E F     L +   +++   L RDL ++T
Sbjct: 683 RARNQKLPSKDPQLFTIEEAFTTVHHLVRLYKVKKPDTLGRDLKQVT 729


>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 256

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 369 FQGTVQELHVELTAPCEKLP 428
           F+GT  E+H+ L A    LP
Sbjct: 150 FEGTAAEMHIALNAVLSSLP 169


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 141 VWPKPQIQVKDDKYYTFDPAVFTVKEPFQKCDFLTKALERYQ 266
           V PKP     D  YY     +  +K   ++ D+L KA E  Q
Sbjct: 519 VTPKPWTSWIDGGYYYSRQPLVRLKGALEQVDYLMKASENGQ 560


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,516,820
Number of Sequences: 5004
Number of extensions: 55210
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)