Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I11
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1000 - 23220878-23221821,23222164-23223001                       33   0.20 
03_02_0187 - 6248226-6249226,6249296-6250148                           30   1.1  
03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012     30   1.4  
05_01_0121 - 833885-833949,834180-834430,834545-834604,834893-83...    29   2.5  
05_04_0319 + 20171486-20171800,20171882-20171956,20172160-201721...    28   5.8  
01_01_0275 - 2265650-2265904,2266044-2266204,2266381-2266588,226...    27   7.7  

>07_03_1000 - 23220878-23221821,23222164-23223001
          Length = 593

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 39/153 (25%), Positives = 55/153 (35%), Gaps = 5/153 (3%)
 Frame = +3

Query: 93  LNIVIPGPQYPPTKGEVWPKPQIQVKDDKYYTFD-PAVFTVKEPFQKCDFLTKALERYQF 269
           L+  +P     P    VWPKP      + +      + F V  P      L+ A      
Sbjct: 19  LSSPLPARCDAPLPVNVWPKPTSMSWAEPHMAVRVSSSFHVVAPSGNAHLLSAARRYAAL 78

Query: 270 LVRDLHR-ITRRFVKRSLGSQYRSLDDEAANDERFQGTVQELHVELTAPCEKLPYFGMDE 446
           L+ + +R +    V  + G          A        V +LH    AP +     G+DE
Sbjct: 79  LLAERYRPLVTPAVNVTAGGAGAGAAGRGAELGYLTLAVSDLH----APLQH----GVDE 130

Query: 447 SYNLX---XXXXXXXXXXXIWGVIRGLETWSQL 536
           SY L                WG +RGLET+SQL
Sbjct: 131 SYALEILPAGAAATVTAATAWGAMRGLETFSQL 163


>03_02_0187 - 6248226-6249226,6249296-6250148
          Length = 617

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = +3

Query: 438 MDESYNLXX---XXXXXXXXXXIWGVIRGLETWSQL 536
           +DESY L                WG IRGLET+SQL
Sbjct: 130 VDESYTLSVLPDSGSADISAATPWGAIRGLETFSQL 165


>03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012
          Length = 890

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
 Frame = +3

Query: 147 PKPQIQVKDDKYYTFDPAVFTVKEPFQKCDFLTKALERYQFLVRDLHRITRR--FVKRSL 320
           P+P      +KY +  P +F  K+   +   L    E  + + +DL  I +R   ++   
Sbjct: 543 PEPNQDFWKEKYISSLPPLFAEKKKKNEQPDLISLFEDQKIMKQDLEEIRKRLYMLESKE 602

Query: 321 GSQYRSLDDEAANDERFQGTVQE 389
           G      D+    D+   GT+Q+
Sbjct: 603 GFHMEEKDEPIQEDDHVVGTIQK 625


>05_01_0121 -
           833885-833949,834180-834430,834545-834604,834893-834926,
           835746-835805,836409-836509,836939-837039,837209-837289,
           837580-837650,837738-837849,838138-838173,838865-838951,
           839055-839396
          Length = 466

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
 Frame = +3

Query: 381 VQELHVELTAPCEKLPYFGMDESYNLXXXXX---------XXXXXXXIWGVIRGLETWSQ 533
           V +L V + +  EKL   G+DESY +                     I+G IRGLET+SQ
Sbjct: 101 VGKLTVVVASADEKLE-LGVDESYTIYVAAAGGVNSIVGGATIEANTIYGAIRGLETFSQ 159

Query: 534 LFYLTND 554
           L     D
Sbjct: 160 LCVFNYD 166


>05_04_0319 +
           20171486-20171800,20171882-20171956,20172160-20172195,
           20172302-20172413,20173082-20173152,20173287-20173417,
           20173718-20173783,20174003-20174103,20174311-20174370,
           20174463-20174496,20174852-20174950,20175019-20175078,
           20175700-20175874,20175900-20175950,20176603-20176632
          Length = 471

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
 Frame = +3

Query: 432 FGMDESYNLXXXXX-----XXXXXXXIWGVIRGLETWSQL 536
           FG+DESYNL                 ++G +  LET+SQL
Sbjct: 108 FGVDESYNLSVPATGSPIYAQIEAQTVFGALHALETFSQL 147


>01_01_0275 -
           2265650-2265904,2266044-2266204,2266381-2266588,
           2266959-2267112,2267557-2267650,2267814-2267919,
           2268001-2268075,2268336-2268443,2268672-2268725,
           2268818-2268910,2269111-2269206,2269682-2269723
          Length = 481

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 21/77 (27%), Positives = 35/77 (45%)
 Frame = +3

Query: 105 IPGPQYPPTKGEVWPKPQIQVKDDKYYTFDPAVFTVKEPFQKCDFLTKALERYQFLVRDL 284
           +PG +    +    PK  I +  D+ + FD    T +EP++    L K   R Q   +  
Sbjct: 91  LPGMKQQLDESVRIPKATIDILKDQVFGFDTFFVTSQEPYEG-GILFKGNLRGQ-PAKSY 148

Query: 285 HRITRRFVKRSLGSQYR 335
            +IT R ++   G QY+
Sbjct: 149 EKITNR-LQNKFGDQYK 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,181,681
Number of Sequences: 37544
Number of extensions: 356446
Number of successful extensions: 894
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)