Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I11
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003740-9|AAC48140.1|  852|Caenorhabditis elegans Hypothetical ...    29   3.0  
AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf (d...    27   6.9  
AC024757-4|AAK68429.2|  371|Caenorhabditis elegans Methionine am...    27   9.1  

>AF003740-9|AAC48140.1|  852|Caenorhabditis elegans Hypothetical
           protein C41D11.6 protein.
          Length = 852

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 138 PLLLADIVAQV*QCLNWRQKIRHTHQTIIDAVAYRN 31
           P+L  ++  +V Q +N R  +R TH  IIDA  + N
Sbjct: 718 PILWREVFTEVVQSVN-RPNVRGTHPAIIDAARHLN 752


>AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 3 protein.
          Length = 666

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 25  YFISICYGIYYCLVCMAYFLP 87
           Y I I Y  YYCLV M +  P
Sbjct: 606 YIIFIAYLTYYCLVAMEFISP 626


>AC024757-4|AAK68429.2|  371|Caenorhabditis elegans Methionine
           aminopeptidase protein 1 protein.
          Length = 371

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = -3

Query: 130 VGGYCGPGITMFKLAAKNTPYTPNNNRCRSISK*NMKTYE 11
           V GYCG GI      A N P+   NN    +   N  T E
Sbjct: 270 VKGYCGHGIHRLFHTAPNVPHYAKNNATGVMKAGNSFTIE 309


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,930,028
Number of Sequences: 27780
Number of extensions: 314011
Number of successful extensions: 863
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)