Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I08
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    30   0.19 
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.3  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    25   5.4  
SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces pom...    25   5.4  
SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence orphan|Schizo...    25   7.2  
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    25   7.2  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    25   9.5  

>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -2

Query: 424 LLYSSTYHMWRYPPFFVRISSGYADVGVLVVGFNV 320
           ++ +S+ H+W   PFF+RI S Y  + +L +  N+
Sbjct: 172 MVATSSLHVWSESPFFIRIRSSYEHL-ILQINKNI 205


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 388 DISTCDMWMNKVESDHIRSGLERRSGIRTNTLLSDILFYLKSSF 519
           D+S C+ W N++    + S  +  + I     L D+L   K++F
Sbjct: 40  DVSQCEHWHNRLCDVGLDSKQKANTAIEIRDALDDVLVTEKTNF 83


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 299 SREEMTNHVETDNQDADI 352
           S+E++   ++ DNQDADI
Sbjct: 277 SKEKIIERIKNDNQDADI 294


>SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -2

Query: 469 EFHFVFQVHCVCGRFLLYSSTYHMW 395
           EF     VHCV    LLYSS    W
Sbjct: 177 EFQRAVSVHCVQTYALLYSSLAKFW 201


>SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence
           orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -2

Query: 328 FNVIGHFFPTTFHHPLSHRNFR-GLCRGNFMNLHVRSYVRF 209
           FN+I  FF   ++H ++  NF+    RG+F  ++ R ++++
Sbjct: 14  FNIILTFFVYEWNHDITCLNFKVKKRRGDFYVINERFFIKY 54


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 459 SSFKSTAYVVAFYFIHPHITCGDIPR 382
           SSF     V+ F+F+   I CG  P+
Sbjct: 212 SSFLKVVIVIIFFFVAIIINCGAAPK 237


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 326 QRDWSFLPYYFPSSPQSPEL 267
           +R   F PYY+P    SP L
Sbjct: 223 RRQTHFAPYYYPQRATSPSL 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,137,381
Number of Sequences: 5004
Number of extensions: 44280
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)