Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I08
         (536 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0176 + 12637287-12637376,12638108-12638280,12638631-126387...    33   0.19 
02_05_0508 - 29623173-29623301,29623410-29623575,29623691-296237...    31   0.44 
07_01_1069 - 9493001-9493176,9493269-9493300,9493405-9493499,949...    27   7.2  
05_01_0505 + 4207841-4208455,4209982-4210143,4210247-4210717           27   7.2  
03_05_0679 + 26678131-26679204                                         27   7.2  
07_01_0224 - 1646114-1648396                                           27   9.5  
06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699...    27   9.5  

>06_02_0176 +
           12637287-12637376,12638108-12638280,12638631-12638743,
           12639125-12639313,12639397-12639464,12639601-12639684,
           12639791-12639844,12640445-12640525,12640615-12640708,
           12640830-12640903,12640976-12641086,12641299-12641355,
           12641458-12641562,12641656-12641772,12641900-12642003,
           12642229-12642394,12642513-12642641
          Length = 602

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 376 VRISSGYADVGVLVVGFNVIGHFFPTTFHHPLSH 275
           V++  G A +   V G +VI H FP T+  PL+H
Sbjct: 34  VKVEYGDAAIAADVAGAHVISHAFPHTYGQPLAH 67


>02_05_0508 -
           29623173-29623301,29623410-29623575,29623691-29623794,
           29623888-29624004,29624315-29624371,29624475-29624519,
           29624610-29624720,29624788-29624861,29624967-29625060,
           29625744-29625797,29626040-29626123,29626244-29626311,
           29626400-29626588,29627193-29627305,29627525-29627697,
           29628444-29628533
          Length = 555

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 376 VRISSGYADVGVLVVGFNVIGHFFPTTFHHPLSH 275
           VR+  G A +     G +VI H FP T+  PL+H
Sbjct: 34  VRVEYGDAAIAADPAGAHVISHAFPHTYGQPLAH 67


>07_01_1069 -
           9493001-9493176,9493269-9493300,9493405-9493499,
           9493623-9493898,9493976-9494039,9498048-9498113,
           9498283-9498413,9499722-9499859,9499964-9500079,
           9500166-9500331,9500435-9500548,9500609-9500692,
           9500995-9501073,9501134-9501337,9501999-9502096,
           9502187-9502284,9502359-9502495,9502606-9502824,
           9503541-9503743,9503856-9504005
          Length = 881

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 113 KNYLDVRTLPDCVNVNGSWTYSQGVLKIV 199
           KN+L V    DC+   G W Y+  V++++
Sbjct: 394 KNHLVVGNSEDCIPNRGRWNYNNKVVRLL 422


>05_01_0505 + 4207841-4208455,4209982-4210143,4210247-4210717
          Length = 415

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 340 LVVGFNVIGHFFPTTFHHPLSHRNFRGLCRGNFMNL 233
           L+VG N  G+     F   + H  + GL RGNF+N+
Sbjct: 162 LMVGSN--GNSTAEVFQSIMKHEGWTGLFRGNFVNV 195


>03_05_0679 + 26678131-26679204
          Length = 357

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 289 HPLSHRNFRGLCRGNFMNLHVRSYVRFHW 203
           H L   N+RGLCRG    LH  +    HW
Sbjct: 296 HGLGGDNYRGLCRG----LHAGAVSLLHW 320


>07_01_0224 - 1646114-1648396
          Length = 760

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
 Frame = -1

Query: 527 RKKKEDFK*KSISLNNVLVRIPLRL----SSPLRM---WSLSTLFIHISHVEISPV 381
           RK  ED+   S SL + ++R+   L     SP  +   W L++L +H  H+E  PV
Sbjct: 35  RKGIEDYAEDSCSLASYMIRVKPGLLPVQPSPKHLCTFWHLNSLVLHKLHMENQPV 90


>06_01_0906 +
           6990892-6991615,6992480-6992679,6992822-6993002,
           6993855-6994046,6994492-6994724,6995537-6995638,
           6995776-6995826,6996234-6996338,6997287-6997353,
           6997946-6997962
          Length = 623

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -2

Query: 220 YVRFHWKNDF*YALTVSPTSVHIYAVRQCPNIQIILLYIALV 95
           Y+R  +  D+ Y   V     H++A+ Q P+ Q++++   LV
Sbjct: 506 YLRSEYGKDYEYDAPVKLLDKHLHAMAQSPDEQLVVVSQVLV 547


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,539,569
Number of Sequences: 37544
Number of extensions: 273654
Number of successful extensions: 702
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)