Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I08
         (536 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092)                     31   0.60 
SB_21827| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)                       28   4.2  
SB_20451| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_2182| Best HMM Match : EGF_CA (HMM E-Value=0)                       27   7.3  

>SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092)
          Length = 1146

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -1

Query: 170 SNFRSHLRSPAMS*HPNNSSVHRPRTYEQLAPSEDRS 60
           S  +S LR P  S  P+ SS H P T +Q +PS+++S
Sbjct: 282 SRHQSSLRHPGSS-KPSTSSKHYPATIDQNSPSKNKS 317


>SB_21827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +2

Query: 296 SSREEMTNHVETDNQDADIGVARGDTDKERGISPHVICG*IK*KATTYAVDLKD 457
           SS EE  +  ++D+ D+     RG+TD +RG      C   K K+   A+++ D
Sbjct: 47  SSGEENDDKYDSDSMDSS---TRGETDHQRGNRTSKTCHRFKSKSKGLAIEISD 97


>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
          Length = 960

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 40  GHRCQSPDRSSDGASCS*VRGRC 108
           GH C  P   ++GA C+ V G+C
Sbjct: 363 GHNCAHPCNCTNGARCNAVTGQC 385


>SB_20451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1328

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -2

Query: 205 WKNDF*YALTVSPTSVHIYAVRQCPNIQIILLYIALVLMNSLHHQKTGPGFDNDVLLIKR 26
           WK+DF    TV+  S+ +   R    I+  ++ +      SL  +K  P   N+  L KR
Sbjct: 641 WKSDFVDTCTVTQASMSVEDKRALAKIEESVMMVDGHYQMSLPWRKEPPYLPNNRPLAKR 700

Query: 25  RL 20
           RL
Sbjct: 701 RL 702


>SB_2182| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 299

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = +2

Query: 101 GDVQKNYLDVRTLP---DCVNVNGSWT 172
           GD+ +  L V T P   DCVN NGS+T
Sbjct: 257 GDIDECALGVATCPASADCVNNNGSYT 283


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,863,247
Number of Sequences: 59808
Number of extensions: 329851
Number of successful extensions: 760
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)