Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I08
         (536 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077540-5|AAC26308.1|  417|Caenorhabditis elegans C-type lectin...    30   1.2  
Z70286-7|CAA94292.3|  431|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF068709-4|AAC19253.2|  297|Caenorhabditis elegans Serpentine re...    27   6.5  
AF025462-4|AAN72424.1|  123|Caenorhabditis elegans Hypothetical ...    27   8.6  
AF025462-3|AAB71002.1|  309|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AF077540-5|AAC26308.1|  417|Caenorhabditis elegans C-type lectin
           protein 20 protein.
          Length = 417

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 331 GFNVIGHFFPTTFHHPLSHRNFRGLC 254
           GF ++G+     FH PLSH+N   +C
Sbjct: 26  GFTLVGNKCLKLFHEPLSHKNAERVC 51


>Z70286-7|CAA94292.3|  431|Caenorhabditis elegans Hypothetical
           protein K08C7.1 protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 424 LLYSSTYHMWRYPPFFVRISSGYADVGVLV 335
           L Y + YH+  YP F  R   G A +G+L+
Sbjct: 90  LFYPTAYHLGFYPSFITRFFQG-APLGILL 118


>AF068709-4|AAC19253.2|  297|Caenorhabditis elegans Serpentine
           receptor, class t protein26 protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 496 VYHLITYWYEFHFVFQVHCVCGRFLLYSSTYHMWRYPPF-FVRISSGYADV 347
           V+ +I   Y  +FVF     C    ++SS Y+ W Y PF F  ++S Y +V
Sbjct: 134 VFIVIPIVYGLYFVFFTP-TC----VFSSRYYAWFYDPFIFPNMTSEYTNV 179


>AF025462-4|AAN72424.1|  123|Caenorhabditis elegans Hypothetical
           protein K10F12.4b protein.
          Length = 123

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -2

Query: 175 VSPTSVHIYAVRQCPNIQIILLYIA 101
           ++P +  +Y++R CP  Q +L+Y+A
Sbjct: 94  LTPGNYRLYSMRFCPYAQRVLIYLA 118


>AF025462-3|AAB71002.1|  309|Caenorhabditis elegans Hypothetical
           protein K10F12.4a protein.
          Length = 309

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -2

Query: 175 VSPTSVHIYAVRQCPNIQIILLYIA 101
           ++P +  +Y++R CP  Q +L+Y+A
Sbjct: 94  LTPGNYRLYSMRFCPYAQRVLIYLA 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,744,094
Number of Sequences: 27780
Number of extensions: 242688
Number of successful extensions: 621
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)