Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I08
         (536 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25190.1 68415.m03012 expressed protein                             29   2.0  
At3g57070.1 68416.m06354 glutaredoxin family protein contains Pf...    27   6.0  
At3g25980.1 68416.m03237 mitotic spindle checkpoint protein, put...    27   6.0  
At4g04340.3 68417.m00621 early-responsive to dehydration protein...    27   7.9  
At4g04340.2 68417.m00620 early-responsive to dehydration protein...    27   7.9  
At4g04340.1 68417.m00619 early-responsive to dehydration protein...    27   7.9  
At3g21175.2 68416.m02676 zinc finger (GATA type) family protein ...    27   7.9  

>At2g25190.1 68415.m03012 expressed protein
          Length = 240

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
 Frame = -1

Query: 251 GQLHESSRP*LRQVSLEKRFLVRPDCKS---NFRSHLRSPAMS*HPNNSSV--------H 105
           G+L ES +  LR  S     L      S   N RSH+R+ +   HP++SS          
Sbjct: 165 GELSESEKKKLRNRSRSDPLLSSSPSSSTPDNHRSHIRAKSSGNHPSSSSSSSSGSKKNR 224

Query: 104 RPRTYEQLAPS 72
           RP+  +Q +PS
Sbjct: 225 RPKAQDQKSPS 235


>At3g57070.1 68416.m06354 glutaredoxin family protein contains Pfam
           profile PF00462: Glutaredoxin
          Length = 417

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -1

Query: 203 EKRFL--VRPDCKSNFRSHLRSPAMS*HPNNSSVHRPRTYEQLAPSEDRS 60
           E+ FL  + P   S+++  L S  +S H N  + HRP      +PS + S
Sbjct: 190 EESFLSDLDPSIVSSYKKALSSKLLSNHSNTRNPHRPTKSLSCSPSSNPS 239


>At3g25980.1 68416.m03237 mitotic spindle checkpoint protein,
           putative (MAD2) identical to Swiss-Prot:Q9LU93 mitotic
           spindle checkpoint protein MAD2 [Arabidopsis thaliana]
          Length = 209

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 305 EEMTNHVETDNQDADIGVARGDTDKE 382
           E     +ETDN+  D GV+R  +DKE
Sbjct: 99  ERWNFRIETDNEVVDKGVSREKSDKE 124


>At4g04340.3 68417.m00621 early-responsive to dehydration
           protein-related / ERD protein-related similar to ERD4
           protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 772

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/17 (58%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
 Frame = -2

Query: 250 GNFMNLHVRSYVRF-HW 203
           G F+NL +RSY++F HW
Sbjct: 59  GRFVNLELRSYLKFLHW 75


>At4g04340.2 68417.m00620 early-responsive to dehydration
           protein-related / ERD protein-related similar to ERD4
           protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 772

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/17 (58%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
 Frame = -2

Query: 250 GNFMNLHVRSYVRF-HW 203
           G F+NL +RSY++F HW
Sbjct: 59  GRFVNLELRSYLKFLHW 75


>At4g04340.1 68417.m00619 early-responsive to dehydration
           protein-related / ERD protein-related similar to ERD4
           protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 772

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/17 (58%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
 Frame = -2

Query: 250 GNFMNLHVRSYVRF-HW 203
           G F+NL +RSY++F HW
Sbjct: 59  GRFVNLELRSYLKFLHW 75


>At3g21175.2 68416.m02676 zinc finger (GATA type) family protein
           similar to zinc finger protein ZIM gi:8918533 from
           [Arabidopsis thaliana]; contains Pfam PF00320: GATA zinc
           finger
          Length = 295

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -2

Query: 379 FVRISSGYADVGVLVVGFNVIGHFFPTTFHHPLSHRNFRGL 257
           F R+S       +L++G   + H  PTT   P  H+N RGL
Sbjct: 91  FDRVSPEKVQAVLLLLGGREVPHTLPTTLGSP--HQNNRGL 129


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,091,618
Number of Sequences: 28952
Number of extensions: 226776
Number of successful extensions: 576
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)