Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_I07
(555 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 29 0.35
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 27 1.4
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 27 1.4
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 27 2.5
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 26 3.2
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual 26 4.3
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 26 4.3
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 26 4.3
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 5.7
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 25 5.7
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 25 7.5
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 7.5
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 25 9.9
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 29.5 bits (63), Expect = 0.35
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +1
Query: 88 YDISNVRPGTVALQSLPSPQLTADTSYQYQPLSIPAYNRFGGDPSYSTNSVSGSSAG 258
Y NVR ++ LQSLP+P L Q S+P +NR+G + + ++S +++G
Sbjct: 443 YSTDNVRTDSLDLQSLPTPTLE-------QLESVP-FNRYGYVRIFPSTTLSSTASG 491
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 27.5 bits (58), Expect = 1.4
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 53 LFKNLRLHRSLYMIFPTLDQEP*LCNHSQVRN*PQILRTNTNHYLYQPI 199
L K L+ HR Y+IF Q NH+ ++ +I++T Y+P+
Sbjct: 88 LLKELKKHRDSYVIFDCPGQVELFTNHNSLQ---KIIKTLEKELDYRPV 133
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 27.5 bits (58), Expect = 1.4
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 5/108 (4%)
Frame = +1
Query: 67 SFASVPVYDISNVRPGTVALQSLPSPQLTADTSYQYQPLSIPAYNRFGGDPSYSTNSVSG 246
+F+S+P+ I + + S + SY+ QP + + R +P + N V
Sbjct: 176 AFSSIPIVSIDEYITWMITENLINSEPSNSSFSYEVQPSNYTTFCRMLDEPLPANNPVQ- 234
Query: 247 SSAGLMSLKGGYTGHI-YLKSIQRRPVPPV----KWPSSTPLTTPVVL 375
S++ L+ L ++ I + + + +P V K S PLT VL
Sbjct: 235 SNSRLVPLMKDFSNDIKHTPNKETQPSNQVDDSLKSKDSKPLTMSEVL 282
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 26.6 bits (56), Expect = 2.5
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +1
Query: 16 TNAVNAESVDKPAFQESSFASVPVYDISNVRPGTVALQSLP 138
T+ + E ++PA +++ S+P Y IS+ R T+ L SLP
Sbjct: 502 TDTDDVEKENRPASNDAN--SMPPYIISSSRDCTIRLWSLP 540
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = -2
Query: 512 WCLDFLCQNHCNSFV-LPESTM 450
WC C N CNSF LP S++
Sbjct: 51 WCGKLFCYNCCNSFAKLPVSSV 72
>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 4.3
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 149 NCGLGSDCRATVPGLTLEISYTGTD 75
NC + + G+TLE++Y TD
Sbjct: 412 NCSSEEEAQQVASGVTLEVAYESTD 436
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 25.8 bits (54), Expect = 4.3
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +1
Query: 142 PQLTADTSYQYQPLSIPAYNRFGGDPSYSTNSVSGSSAGLMSLKGGYTGHIYLKSIQ-RR 318
P+ A TS + LSI + G D + V GS+A ++ K T + + ++ R
Sbjct: 238 PERDAATSEYLESLSIKPFEYSGSDDATDVLLVFGSAASELA-KAAVTSSVAVAIVRVLR 296
Query: 319 PVPPVKWPSSTPLTT 363
P P K P +T
Sbjct: 297 PWLPSKLQEVLPTST 311
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 25.8 bits (54), Expect = 4.3
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 266 LIRPALEPDTELVL*EGSPPNLL*AGIDNGWY-WYEVSAVN 147
LI PALEP+T + +G P D WY WY S +N
Sbjct: 806 LISPALEPNTTYI--QGIIP----GDNDTIWYDWYNHSVIN 840
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 25.4 bits (53), Expect = 5.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 34 ESVDKPAFQESSFASVPVYDISNVRPGTVALQSLPS 141
E +D P +E S S+P+ D+SN G + + PS
Sbjct: 941 EDIDVP-LREGSLTSIPIDDVSN--SGDITMGEEPS 973
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 25.4 bits (53), Expect = 5.7
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -3
Query: 334 SQEVLVSVVLISNICALCNLLLNSSDPHLNLIR 236
S+EVL+ ++ C L +++LN +N++R
Sbjct: 110 SEEVLLKEASYASYCGLSSIILNGPTSPMNVMR 142
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 120 YGSWSNVGNIIYRDRCKRRFLKSRFINRFRVHCIRFI 10
Y + V NI + +LK+ I+ F + CIRFI
Sbjct: 682 YSGIATVFNITFPPILYGSYLKTSTISPFHLACIRFI 718
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +1
Query: 25 VNAESVDKPAFQESSFASVPVYDISNVRPGTVALQSLPSPQLTADTS 165
V+ +D P+ E+ F+ + V + +V + + PSP L++ S
Sbjct: 297 VDTPGIDAPSDLEAKFSDLGVSSVVSVTSPLQSCTNSPSPPLSSPAS 343
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 24.6 bits (51), Expect = 9.9
Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Frame = +1
Query: 64 SSFASVPVYDISNVRPGTVALQSLPSPQLTADTSYQYQPLSIPAYNRF--GGDPSYSTNS 237
SS++S D S +RP + + S S T D S + +S+ A S+ T++
Sbjct: 410 SSYSSTSNTDKS-LRPSSYSAVS-ESSNFTHDVSRDNKEISLNAPKSIIVSQSDSFDTSN 467
Query: 238 VSGSSAGLMS---LKGGYTGHIYLKSIQRRPVPPVKWPSSTPLTTPVVLIPGLYT 393
V+ + + + G ++ ++S+++ V P++ S + + +L P LY+
Sbjct: 468 VTQDAPNDVEKEPISGQMPNNLSVQSLKQLEVYPIRHSVSIEMPSEKLLSPRLYS 522
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,493
Number of Sequences: 5004
Number of extensions: 50810
Number of successful extensions: 156
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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