Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_I07
(555 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0674 + 19788198-19789817 33 0.15
02_05_0294 + 27609656-27611305 31 0.47
08_02_1468 - 27338052-27339506 31 0.62
09_06_0008 - 20168429-20170054 31 0.82
04_04_0853 + 28745953-28747635 30 1.1
10_06_0029 + 9822216-9823124,9825210-9825329,9826188-9826304,982... 30 1.4
03_02_0251 - 6821612-6823405,6823738-6823878 29 1.9
02_05_1162 - 34593101-34594624 29 1.9
07_01_0975 + 8223269-8224354 29 2.5
05_01_0524 - 4522488-4523762,4524534-4524644,4524794-4524889 29 3.3
03_02_0383 + 7966929-7968951,7969085-7969104 29 3.3
02_05_1000 + 33417357-33417600,33417692-33417744,33418376-334184... 29 3.3
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644... 28 5.8
09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672... 27 7.6
08_02_0116 + 12762009-12763021,12763421-12763436 27 7.6
06_03_0454 - 20968052-20969758 27 7.6
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 27 7.6
03_04_0157 + 17791540-17791681,17792809-17792908,17793386-177934... 27 7.6
>10_08_0674 + 19788198-19789817
Length = 539
Score = 33.1 bits (72), Expect = 0.15
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2
Query: 176 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 84
W+WYE+ + CGL ++ RATV + + I T
Sbjct: 296 WWWYEIMILLCGLLANPRATVASMGILIQTT 326
>02_05_0294 + 27609656-27611305
Length = 549
Score = 31.5 bits (68), Expect = 0.47
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -2
Query: 176 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 84
W+WYE+ + CGL ++ +ATV + + I T
Sbjct: 323 WWWYEIMILLCGLLANPQATVASMGILIQTT 353
>08_02_1468 - 27338052-27339506
Length = 484
Score = 31.1 bits (67), Expect = 0.62
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 176 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 84
W+WYE+ + CG+ +D +A V + + I T
Sbjct: 244 WWWYEIMVLLCGVLADPKAAVAAMGILIQTT 274
>09_06_0008 - 20168429-20170054
Length = 541
Score = 30.7 bits (66), Expect = 0.82
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 176 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 84
W+WYE+ + CG+ +D +A V + + I T
Sbjct: 297 WWWYEIMVLLCGVLADPKAAVAAMGVLIQTT 327
>04_04_0853 + 28745953-28747635
Length = 560
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 176 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 84
W+WYE+ + CGL + +ATV + + I T
Sbjct: 322 WWWYEIMILLCGLLLNPQATVASMGILIQTT 352
>10_06_0029 +
9822216-9823124,9825210-9825329,9826188-9826304,
9826387-9826476,9826706-9826756
Length = 428
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 58 QESSFASVPVYDISNVRPGTVALQSLPSPQLTADTSYQYQPLSIPAYNRF 207
+ES A+V + S++ PG A + P DT P SIP RF
Sbjct: 156 KESILAAVRLLR-SSISPGNAAAAAAPDADAATDTDTDAAPPSIPTQTRF 204
>03_02_0251 - 6821612-6823405,6823738-6823878
Length = 644
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 176 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 84
W+WYE+ V GL ++ RATV + + I T
Sbjct: 292 WWWYELMIVLSGLLANPRATVASMGILIQAT 322
>02_05_1162 - 34593101-34594624
Length = 507
Score = 29.5 bits (63), Expect = 1.9
Identities = 33/126 (26%), Positives = 47/126 (37%)
Frame = +1
Query: 16 TNAVNAESVDKPAFQESSFASVPVYDISNVRPGTVALQSLPSPQLTADTSYQYQPLSIPA 195
TN V+ V P F + + ++ A Q P P A + P ++P
Sbjct: 276 TNPVSDHVVVSPVVSPGEFQR-QIQGLEKLQFADTAAQQPPPPPAPATAAPP--PAALP- 331
Query: 196 YNRFGGDPSYSTNSVSGSSAGLMSLKGGYTGHIYLKSIQRRPVPPVKWPSSTPLTTPVVL 375
R G D S + + A + T YL Q +P P PSS P T +
Sbjct: 332 --RNGSDDSLTR---AYPPATVTPTPPTATPEYYLPKYQEKPAAPP--PSSAPPPTAFLP 384
Query: 376 IPGLYT 393
+PG YT
Sbjct: 385 VPGRYT 390
>07_01_0975 + 8223269-8224354
Length = 361
Score = 29.1 bits (62), Expect = 2.5
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Frame = +1
Query: 55 FQESSFASVPV--YDISNVRPGTVALQSLPSPQLTADTSY-------QYQPLSIPAYNRF 207
++ SS A+ P S+V G+ + S P P + DT Y P S P+ +
Sbjct: 198 YESSSAAAAPAPSESDSDVGSGSGSAASAPGPSPSDDTGYGGSSGSPSSSPSSSPSSSPS 257
Query: 208 GGDPSYSTNSVSGSSAGLMSLKGGYT 285
G S + S SGS AG S GG T
Sbjct: 258 GSPSSSPSGSPSGSPAG--SPAGGPT 281
>05_01_0524 - 4522488-4523762,4524534-4524644,4524794-4524889
Length = 493
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 185 DNGWYWYEVSAVNCGLGSDCRATVPGLTLEISYTGTDANEDS 60
DN Y +E N +G+ C+AT + SY G + E+S
Sbjct: 109 DNCPYLHEPLTSNDAVGTSCKATTSNPAVSKSYVGDEMVEES 150
>03_02_0383 + 7966929-7968951,7969085-7969104
Length = 680
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 317 LRCIDFKYMCPV*PPFKLIRPALEPDTELVL*EGSPPNL 201
LRCI +C P + RP+ E E++ EG PPNL
Sbjct: 619 LRCITVALLCIQRSPSR--RPSSEEVLEMLSGEGEPPNL 655
>02_05_1000 +
33417357-33417600,33417692-33417744,33418376-33418413,
33418720-33419114,33420092-33420221,33420512-33421343
Length = 563
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 208 GGDPSYSTNSVSGSSAGLMSLKGGYTGHIYLKSIQRRPVPPVK-WPSSTPLT 360
GGD +T + GSSAG+ + K + +L + + P + P PLT
Sbjct: 82 GGDDDKATEGIRGSSAGMYTDKRSVSEDTHLYPSTKPTIKPARPQPQMHPLT 133
>01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,
6448164-6448243,6449045-6449129,6449221-6449312,
6449388-6449456,6449544-6449580,6449662-6449744,
6450427-6450873,6450978-6451014,6451101-6451158,
6451243-6451382,6451610-6451675,6451794-6451908,
6453261-6453299,6453482-6453543
Length = 1927
Score = 27.9 bits (59), Expect = 5.8
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 388 YTYHLEDYSWTESLLNFTSDSI 453
Y +H+ D+ ++ LLNFT++ I
Sbjct: 1094 YLFHMSDHMFSSMLLNFTAEDI 1115
>09_06_0351 +
22466160-22466217,22466514-22467052,22467186-22467293,
22467391-22467546,22467916-22468131,22468639-22468776,
22468880-22468981,22469089-22469146,22469346-22469408,
22469543-22469640
Length = 511
Score = 27.5 bits (58), Expect = 7.6
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +3
Query: 261 DEFKRRLHRAHIFEINTTETSTSCEMA*FNAIDHTGRINSWTLYIS--FGRL*LDRKLVE 434
D+F R R IF+++ STS E +A H ++S T Y++ F L R+ +E
Sbjct: 39 DKFSRLTTRTTIFQVSNYSRSTSMERFQLSARFHQPVVDSSTNYLTRWFYNANLKRRRIE 98
>08_02_0116 + 12762009-12763021,12763421-12763436
Length = 342
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 129 LQSYGSWSNVGNIIYRDRCKRRFLKSRFINRFRVHCIRFIWFH 1
LQ S + +G I++ D C+ LK + + C R + FH
Sbjct: 192 LQLQSSLNTLGYIMFDDSCELNCLKDKIFAHSDLPCSRNVIFH 234
>06_03_0454 - 20968052-20969758
Length = 568
Score = 27.5 bits (58), Expect = 7.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 176 WYWYEVSAVNCGLGSDCRATVPGL 105
W+WYEV + CGL + R V +
Sbjct: 318 WWWYEVMILLCGLLPEPRPAVASM 341
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 27.5 bits (58), Expect = 7.6
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = +1
Query: 76 SVPVYDISNVRPGTVALQSLPSPQLTADTSYQYQPLSIPAYNRFGGDPSYSTNS 237
S P Y+ S+V+ S SP + TS Y P S P+Y++ PSYS S
Sbjct: 1804 SSPSYNPSSVKYTPSHAYSPSSPNYYSSTSPTYSPTS-PSYSQ--PSPSYSPTS 1854
>03_04_0157 + 17791540-17791681,17792809-17792908,17793386-17793477,
17793562-17793620,17794135-17795637,17796478-17796720,
17796831-17797145,17797571-17797573,17798399-17798638,
17798975-17799259,17799335-17799556,17800105-17800266,
17800411-17800545,17802452-17802688,17802787-17802960,
17803692-17803934
Length = 1384
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 19 NAVNAESVDKPAFQESSFASVPVYDISNVR-PGTVALQSLPS 141
N ++ + P + + F S VYDI NVR G V + PS
Sbjct: 918 NGGHSHDLSLPVLERAMFHSDNVYDIPNVRVNGQVCFTNFPS 959
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,583,024
Number of Sequences: 37544
Number of extensions: 325637
Number of successful extensions: 908
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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