Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_I07
(555 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53) 34 0.068
SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6) 30 1.5
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_40917| Best HMM Match : Filament (HMM E-Value=1.7) 29 2.6
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 29 2.6
SB_25931| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_44231| Best HMM Match : Ion_trans_2 (HMM E-Value=6.5e-09) 28 4.5
SB_19151| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_57764| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
>SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)
Length = 287
Score = 34.3 bits (75), Expect = 0.068
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Frame = +1
Query: 76 SVPVYDISNVRPGTVALQSLPSPQLTADTSYQYQPLSIPAYNRFGGDPSYSTNSVSGSSA 255
SVP S+VR T Q + +SY Y P + P+Y + P+ + + S ++A
Sbjct: 131 SVPSTSPSSVRSATPYYPQTQQQQSSVSSSYSYYPRAAPSY--YYSPPAPAAYAPSTATA 188
Query: 256 GLMSLKGGYTGHIYLKSIQRRP--VPPVKWPSSTPLTT 363
+ + G ++ +S P PV+ PS +PLT+
Sbjct: 189 TVAA-----AGGVFTESTPLHPPLSAPVRAPSPSPLTS 221
>SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)
Length = 237
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = +1
Query: 49 PAFQESSFASVPVYDISNVRPGTVALQSLPSPQLTADT-SYQYQPLSIPAYNRFGGDPSY 225
P FQ+ PV P + A L P T+ +Y Y P + PS
Sbjct: 118 PFFQQQPLVPTPVTLGGTSAPASTAAPPLSYPAPTSSPHAYPYSPAQVQLSTPPQTPPSP 177
Query: 226 STNSVSGSSAGLMS 267
STN+ +G + +M+
Sbjct: 178 STNASAGGTVTVMA 191
>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2992
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 191 GIDNGWYWYEVSAVNCGLGSDCRATVPGLTLEISYT 84
G G++W VS G G C +VP L I +T
Sbjct: 2663 GSMEGFWWSYVSMTTVGYGDRCPVSVPARILSIGWT 2698
>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2851
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/79 (26%), Positives = 34/79 (43%)
Frame = +1
Query: 16 TNAVNAESVDKPAFQESSFASVPVYDISNVRPGTVALQSLPSPQLTADTSYQYQPLSIPA 195
T+A + S P +S F + +Y S+ + G+ + S+P TA SY P+
Sbjct: 2153 TSAPSPLSQQTPELFQSPFLNSNLYSASSFQ-GSQSFMSIPLVPTTATQSYVATRTQAPS 2211
Query: 196 YNRFGGDPSYSTNSVSGSS 252
G P +T S+ S
Sbjct: 2212 VLTLQGQPKSATGSMFAPS 2230
>SB_40917| Best HMM Match : Filament (HMM E-Value=1.7)
Length = 421
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +1
Query: 97 SNVRPGTVALQSLPSPQLTADTSYQYQPLSIPAYNRFG--GD-PSYSTNSVSGSS 252
S VR T A+ SLP P + D + + + + +FG D P S SVS S
Sbjct: 234 SEVRKTTTAILSLPDPGIHPDEQHSEENTPVEGHRKFGELSDVPEASQESVSVDS 288
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 29.1 bits (62), Expect = 2.6
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Frame = +1
Query: 124 LQSLPSPQLT-ADTSYQYQPLSIPAYNRFGGDPSYSTNSVSGSSAGLMSLKGGYT---GH 291
L+S P P +D+ Y S + N +GG Y S S G S GG + G
Sbjct: 443 LRSNPKPDYNRSDSRSSYNNSS--SMNGYGGGSGYGGGSSSRGGGGGRSSSGGNSRSGGS 500
Query: 292 IYLKSIQRRPVPPVKWPSS 348
Y S P PP PS+
Sbjct: 501 SYKSSNPPPPPPPRNQPSN 519
>SB_25931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 988
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 212 PPNLL*AGIDNGWYWYEVSAVNCGLGSDCRAT 117
P ++ + N YEV +NCGLG C T
Sbjct: 431 PERIIKSRTQNKVECYEVQWINCGLGESCEPT 462
>SB_44231| Best HMM Match : Ion_trans_2 (HMM E-Value=6.5e-09)
Length = 441
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 191 GIDNGWYWYEVSAVNCGLGSDCRATVPGLTLEI 93
G G++W VS G G C A+VP L I
Sbjct: 36 GSMEGFWWSYVSMTTVGYGDRCPASVPARILSI 68
>SB_19151| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 235 SVSGSSA--GLMSLKGGYTGHIYLKSIQRRPVPPVKWPSSTPL 357
SV+G +A G + + GG+ GH YLK ++ W S PL
Sbjct: 513 SVAGIAALNGRIYVVGGFDGHDYLKDVECYDPQTDTWLSVAPL 555
>SB_57764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 462
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = +1
Query: 28 NAESVDKPAFQESSFASVPVYDISNVRPGTVALQSLPSPQLTADTSYQYQPLSIPAY 198
NA + +ESSF+ V + +SN LQSL P + +Y PL Y
Sbjct: 186 NALEIQYEEVKESSFSEVIIRTVSNNIKQCYELQSLTDPFIQDTPINEYCPLEHRPY 242
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,154,282
Number of Sequences: 59808
Number of extensions: 388692
Number of successful extensions: 1281
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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