Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I07
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016415-2|AAW88413.1|  296|Caenorhabditis elegans Serpentine re...    30   0.97 
AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid deplet...    29   2.2  
Z82090-4|CAB05008.2|  543|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AF016415-2|AAW88413.1|  296|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 29 protein.
          Length = 296

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 19/63 (30%), Positives = 35/63 (55%)
 Frame = -3

Query: 325 VLVSVVLISNICALCNLLLNSSDPHLNLIRN*YCKKDLRQIYYRLV*IMVGIGTKYLRLI 146
           +LV V++   +CA+ ++LLN +   + +++    K ++R  YYR V + V  G   L  I
Sbjct: 4   ILVLVLVTGIVCAIFDVLLNLNLVWIIVLKKSQRKPEMRLFYYRFV-LDVCFGLSLLSYI 62

Query: 145 ADL 137
           + L
Sbjct: 63  SFL 65


>AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid depleted
           protein 3 protein.
          Length = 1599

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 134 SDCRATVPGLTLEISYTGTDANEDS*KAGLSTDSAFTAFV 15
           +DC  T+P LTLE++   T  N D+   G+     F  F+
Sbjct: 783 ADCLLTLPRLTLELTSKRTRDNIDNYVGGIHISGQFKGFM 822


>Z82090-4|CAB05008.2|  543|Caenorhabditis elegans Hypothetical
           protein ZK337.2 protein.
          Length = 543

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 19/69 (27%), Positives = 34/69 (49%)
 Frame = +1

Query: 49  PAFQESSFASVPVYDISNVRPGTVALQSLPSPQLTADTSYQYQPLSIPAYNRFGGDPSYS 228
           PA   S+ A   +Y+ +  +P +  +   P   +TAD   + Q  S   ++     P+Y+
Sbjct: 35  PALVISTIACPTIYEQAPSKPASPTMPLSPYEGITADLMQRIQLFS-SQFDHARLSPNYA 93

Query: 229 TNSVSGSSA 255
           T+ + GSSA
Sbjct: 94  TSDL-GSSA 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,400,130
Number of Sequences: 27780
Number of extensions: 286639
Number of successful extensions: 1018
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)