Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I05
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    27   1.5  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    27   2.0  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   4.6  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    26   4.6  

>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 7   SSDHEYNRTALGDAIDKTSLQFLKETYTSSKDKNVVSSPLGVMMLM 144
           S  H+ N + L + +   +    K  YT +KD ++V SP G+   M
Sbjct: 299 SPQHQANPSTLNNPLKTQNFDSSKNLYTDNKDSSLV-SPTGLQSRM 343


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 223 PRYNLHCLKTCRSPHDYLHRRQLCTEALAS 134
           P++N HCLK C      L +   C  A  S
Sbjct: 711 PKFNRHCLKICERRLPLLQQSFFCLAATVS 740


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 52  DKTSLQFLKETYTSSKDKNVVSSPLGVMMLMLLYKAGAGE 171
           D +S+    +T   S  +N++   +GV   +LL  +G+GE
Sbjct: 535 DNSSISCAFQTNVPSLPRNIILEGVGVDRNLLLVSSGSGE 574


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
            Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 17/82 (20%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +1

Query: 4    YSSDHEYNRTALGDAIDKTSLQFLKETYTSSKDKNVVSSPLGVMMLMLLYKAGAGEGSRA 183
            Y+S  E++  +  +   K S++  K  +TS +D+ ++ +    +++  +Y  G     + 
Sbjct: 864  YASVEEFDYFSSTEHASKRSVKRFKNDFTSDEDETLIRA----VVITQIYYGGTNRLIKW 919

Query: 184  E-IDKFLGNGDYSGVANPYISL 246
            E + K   N D   +   Y+S+
Sbjct: 920  EAVQKCFPNRDIYALTRRYLSI 941


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.131    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,403
Number of Sequences: 5004
Number of extensions: 50864
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)