Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_I03
(513 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_35006| Best HMM Match : PT (HMM E-Value=3.4) 31 0.74
SB_16473| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_39681| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_52045| Best HMM Match : DUF1605 (HMM E-Value=3.8e-14) 27 9.1
SB_27236| Best HMM Match : P19Arf_N (HMM E-Value=5.1) 27 9.1
SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_9976| Best HMM Match : PIP5K (HMM E-Value=2) 27 9.1
SB_1646| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37) 27 9.1
SB_3115| Best HMM Match : AAA (HMM E-Value=0) 27 9.1
>SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1390
Score = 32.7 bits (71), Expect = 0.18
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +2
Query: 269 VLERTKDEELNVVGNQLGCRVVELLLPYASPEDLERFIDALSPELRRLCSDNFTSHVIE 445
+L D+ +V +Q G V++ +L + +PED + + L + L F S+V+E
Sbjct: 1230 ILNEMHDQTDRLVQDQYGNYVIQHVLEHGTPEDRSKIVMQLRGNILPLSQHKFASNVVE 1288
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +2
Query: 320 GCRVVELLLPYASPEDLERFIDALSPELRRLCSDNFTSHVIETLL 454
GCRV++ +L + E ++ + + RL D + ++VI+ +L
Sbjct: 1211 GCRVIQRILEHCLTEQTLPILNEMHDQTDRLVQDQYGNYVIQHVL 1255
>SB_35006| Best HMM Match : PT (HMM E-Value=3.4)
Length = 325
Score = 30.7 bits (66), Expect = 0.74
Identities = 22/83 (26%), Positives = 39/83 (46%)
Frame = -1
Query: 513 SSFSAVTFCKGSVALRHDTRKRVSITWLVKLSEHNLRNSGDNASMKRSRSSGEAYGKRSS 334
S + T +G + D V WL +L + R + N +++ + +S + +
Sbjct: 120 SDMVSTTSSEGILHTTDDFAINVGFDWLSELQQDPPRPTTVN-TLQTTSTSINVVNEPTV 178
Query: 333 TTRHPS*LPTTFNSSSFVLSRTL 265
T+ P+ PTT++S V SRTL
Sbjct: 179 TSSQPTMTPTTYSSHRNVRSRTL 201
>SB_16473| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 477 VALRHDTRKRVSITWLVKLSEHNLRNSGDNASMKRS 370
VA+RHD R++ S WL + E L N+ K S
Sbjct: 4 VAVRHDCRRKASPYWLAVMREDVLVNAATGRFQKNS 39
>SB_39681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = -1
Query: 381 MKRSRSSGEAYGKRSSTTRHPS*LPTTFNSSSFVLSRTLFTRTCLSSSFSMP 226
++R ++ E +RS+ T LPTTF+S ++S R SS+++P
Sbjct: 2 VRREATAHEIKPQRSNLTTGT--LPTTFDSFFHIISHKYNNRLSAKSSYTLP 51
>SB_52045| Best HMM Match : DUF1605 (HMM E-Value=3.8e-14)
Length = 812
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = -2
Query: 149 LFSHIFLHSPRNS---CASFVSFSNLDLFLNHLHSSCV 45
L+ + L+ P NS C V+ +L LFL H H+S V
Sbjct: 408 LYFGLSLYYPHNSSVLCQKVVALPSLGLFLYHPHNSSV 445
>SB_27236| Best HMM Match : P19Arf_N (HMM E-Value=5.1)
Length = 395
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 477 VALRHDTRKRVSITWLVKLSEHNLRNSGDNASMKRSRSSGEA 352
VA+RHD R+ S WL + E L + K S +G +
Sbjct: 224 VAVRHDRRREASPYWLAVMMEDVLVIAASGRFQKNSVCNGNS 265
>SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1931
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = -2
Query: 179 LTFSCLVPFDLFSHIFLHSPRNSCASFVSFSNLDLFL--NHLHSSCVTNIFSL 27
+ ++ LVP D FS F P C F+S D F +C ++FSL
Sbjct: 576 IDYALLVPEDRFSEDFSLLPGIVCLDFISDCGKDEFYIKPTTKGACAKSVFSL 628
>SB_9976| Best HMM Match : PIP5K (HMM E-Value=2)
Length = 673
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 492 FCKGS-VALRHDTRKRVSITWLVKLSE 415
+CK VA+RHD R+ S WL + E
Sbjct: 494 YCKDDIVAVRHDRRREASPYWLAVMME 520
>SB_1646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 534
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 344 LPYASPEDLERFIDALSPELRRLCSD 421
LP+A PED +F+ ++ LR L S+
Sbjct: 411 LPFARPEDYPQFVKSIGLALRGLLSE 436
>SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)
Length = 1376
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 144 KKVKWDEARKCQRNYTNTL 200
KK K ++ARKCQ+NY L
Sbjct: 1019 KKEKANKARKCQKNYMRRL 1037
>SB_3115| Best HMM Match : AAA (HMM E-Value=0)
Length = 913
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 212 DVIKQGIENDEERHVLVNNVLERTKDEELNVVGNQLGCRVVELLLPYASPEDLERF 379
++IK+ + N ++ L+ +L + DEE V GC L+L S ++ F
Sbjct: 684 ELIKKEVLNYDDISSLIGLILPKLFDEEWAVQVRTAGCHSAILMLDALSAHEMTHF 739
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,193,698
Number of Sequences: 59808
Number of extensions: 345839
Number of successful extensions: 1153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -