Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_I03
(513 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39854-2|AAA81077.2| 703|Caenorhabditis elegans Puf (pumilio/fb... 40 0.001
Z81507-1|CAB04133.1| 485|Caenorhabditis elegans Hypothetical pr... 31 0.48
U21319-6|AAC46676.3| 535|Caenorhabditis elegans Puf (pumilio/fb... 31 0.48
AF036698-2|AAB88353.1| 485|Caenorhabditis elegans Puf (pumilio/... 31 0.48
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 30 0.85
AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical ... 29 2.6
U13642-9|AAG00035.1| 187|Caenorhabditis elegans Clock (biologic... 27 7.9
>U39854-2|AAA81077.2| 703|Caenorhabditis elegans Puf (pumilio/fbf)
domain-containingprotein 9 protein.
Length = 703
Score = 39.5 bits (88), Expect = 0.001
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Frame = +2
Query: 215 VIKQGIENDEERHV--LVNNVLERTKDEELNVVGNQLGCRVVELLLPYASPEDLERFIDA 388
VI++ IE E + +++ + D + + GCRV++ +L Y + E + +DA
Sbjct: 467 VIQKVIERVEPERLQFIIDAFTKNNSDNVYTLSVHPYGCRVIQRVLEYCNEEQKQPVLDA 526
Query: 389 LSPELRRLCSDNFTSHVIETLL 454
L L++L D + ++VI+ ++
Sbjct: 527 LQIHLKQLVLDQYGNYVIQHVI 548
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/73 (20%), Positives = 34/73 (46%)
Frame = +2
Query: 236 NDEERHVLVNNVLERTKDEELNVVGNQLGCRVVELLLPYASPEDLERFIDALSPELRRLC 415
N+E+R+ LV + + + + GCRV++ L Y + + + ++ +
Sbjct: 404 NNEQRNQLVGTI----RGNVMKLALQMYGCRVIQKALEYVEEKYQHEILGEMEGQVLKCV 459
Query: 416 SDNFTSHVIETLL 454
D +HVI+ ++
Sbjct: 460 KDQNGNHVIQKVI 472
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = +2
Query: 215 VIKQGIENDEERHVLVNNVLERTKDEELNVVGNQLGCRVVELLLPYASPEDLERFIDALS 394
VI++ +E EE++ + +L + + L V +Q G V++ ++ PE L+ IDA +
Sbjct: 431 VIQKALEYVEEKYQ--HEILGEMEGQVLKCVKDQNGNHVIQKVIERVEPERLQFIIDAFT 488
>Z81507-1|CAB04133.1| 485|Caenorhabditis elegans Hypothetical
protein F18A11.1 protein.
Length = 485
Score = 31.1 bits (67), Expect = 0.48
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 311 NQLGCRVVELLLPYASPEDLERFIDALSP-ELRRLCSDNFTSHVIETLLR 457
++ CRVV+L L ++ + I LS +L +C+D + HVI+ +++
Sbjct: 176 DKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVK 225
>U21319-6|AAC46676.3| 535|Caenorhabditis elegans Puf (pumilio/fbf)
domain-containingprotein 8 protein.
Length = 535
Score = 31.1 bits (67), Expect = 0.48
Identities = 19/83 (22%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Frame = +2
Query: 215 VIKQGIENDEERHV--LVNNVLERTKD-EELNVVGNQLGCRVVELLLPYASPEDLERFID 385
V+++ IE ++V +V+ +LE + E++V + GCRVV+ L + SP + I
Sbjct: 320 VVQKAIEKVSPQYVQFIVDTLLESSNTIYEMSV--DPYGCRVVQRCLEHCSPSQTKPVIG 377
Query: 386 ALSPELRRLCSDNFTSHVIETLL 454
+ + ++ + ++V++ ++
Sbjct: 378 QIHKRFDEIANNQYGNYVVQHVI 400
>AF036698-2|AAB88353.1| 485|Caenorhabditis elegans Puf
(pumilio/fbf) domain-containingprotein 7 protein.
Length = 485
Score = 31.1 bits (67), Expect = 0.48
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 311 NQLGCRVVELLLPYASPEDLERFIDALSP-ELRRLCSDNFTSHVIETLLR 457
++ CRVV+L L ++ + I LS +L +C+D + HVI+ +++
Sbjct: 176 DKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVK 225
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 30.3 bits (65), Expect = 0.85
Identities = 21/75 (28%), Positives = 38/75 (50%)
Frame = -1
Query: 402 NSGDNASMKRSRSSGEAYGKRSSTTRHPS*LPTTFNSSSFVLSRTLFTRTCLSSSFSMPC 223
+SG ++++ S + G +ST+ P+ P+T N ++ + T T ++S + P
Sbjct: 471 SSGSSSTVVTSTITPSTQGVPTSTSNQPT--PSTSNPTTPKSTVTASPSTTGATSTASPS 528
Query: 222 LITSKIPTKYWYSSS 178
ITS PT +S S
Sbjct: 529 TITSSAPTSQSHSPS 543
>AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical
protein T23E7.2c protein.
Length = 885
Score = 28.7 bits (61), Expect = 2.6
Identities = 21/60 (35%), Positives = 34/60 (56%)
Frame = +2
Query: 230 IENDEERHVLVNNVLERTKDEELNVVGNQLGCRVVELLLPYASPEDLERFIDALSPELRR 409
+E R V+ + L RT+ ++L+ +Q CR +ELL PY +P ++E PE+RR
Sbjct: 775 LERSLSREVIQKDRL-RTEYQQLSTKLDQ-ACRQMELLSPY-TPPNMEDHRLINRPEIRR 831
>U13642-9|AAG00035.1| 187|Caenorhabditis elegans Clock (biological
timing) abnormalityprotein 1 protein.
Length = 187
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +2
Query: 143 KKGQMGRGTKMSEELYQYFVGILDVIKQGIENDEERHVLVNNVLERTKDEELN 301
K+G M + E + Q++ D +K+ + +D E H + +L R +DEEL+
Sbjct: 101 KEGAMACTIAVEELIGQHYN---DQLKELLADDPETHKELLKILTRLRDEELH 150
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,988,295
Number of Sequences: 27780
Number of extensions: 256718
Number of successful extensions: 789
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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