Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_I03
(513 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72320.3 68414.m08362 pumilio/Puf RNA-binding domain-containi... 39 0.002
At1g72320.2 68414.m08361 pumilio/Puf RNA-binding domain-containi... 39 0.002
At1g72320.1 68414.m08363 pumilio/Puf RNA-binding domain-containi... 39 0.002
At3g20250.1 68416.m02565 pumilio/Puf RNA-binding domain-containi... 36 0.016
At1g35730.1 68414.m04441 pumilio/Puf RNA-binding domain-containi... 32 0.26
At4g08560.1 68417.m01408 pumilio/Puf RNA-binding domain-containi... 31 0.60
At1g14850.1 68414.m01776 non-repetitive/WGA-negative nucleoporin... 31 0.60
At1g35750.1 68414.m04445 pumilio/Puf RNA-binding domain-containi... 30 1.1
At4g39850.1 68417.m05646 peroxisomal ABC transporter (PXA1) iden... 29 1.4
At4g08840.1 68417.m01453 pumilio/Puf RNA-binding domain-containi... 29 2.4
At1g63820.1 68414.m07222 hypothetical protein 29 2.4
At1g61900.2 68414.m06984 expressed protein contains similarity t... 29 2.4
At1g61900.1 68414.m06983 expressed protein contains similarity t... 29 2.4
At5g27540.1 68418.m03297 GTP-binding protein-related low similar... 28 3.2
At4g27340.1 68417.m03923 Met-10+ like family protein ; contains... 28 3.2
At5g56510.1 68418.m07052 pumilio/Puf RNA-binding domain-containi... 28 4.2
At4g25880.2 68417.m03722 pumilio/Puf RNA-binding domain-containi... 28 4.2
At4g25880.1 68417.m03721 pumilio/Puf RNA-binding domain-containi... 28 4.2
At3g10650.1 68416.m01281 expressed protein 28 4.2
At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative sim... 28 4.2
At1g50630.1 68414.m05690 expressed protein 28 4.2
At1g19920.1 68414.m02497 sulfate adenylyltransferase 2 / ATP-sul... 28 4.2
At5g05570.1 68418.m00605 transducin family protein / WD-40 repea... 27 5.6
At4g17680.1 68417.m02641 expressed protein 27 7.4
At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containi... 27 7.4
At5g09610.1 68418.m01112 pumilio/Puf RNA-binding domain-containi... 27 9.8
At4g01700.1 68417.m00221 chitinase, putative similar to peanut t... 27 9.8
At1g79890.1 68414.m09334 helicase-related similar to CHL1 potent... 27 9.8
At1g70350.1 68414.m08093 expressed protein 27 9.8
>At1g72320.3 68414.m08362 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile: PF00806 Pumilio-family
RNA binding domains (aka PUM-HD, Pumilio homology
domain) (5 copies)
Length = 731
Score = 38.7 bits (86), Expect = 0.002
Identities = 25/96 (26%), Positives = 42/96 (43%)
Frame = +2
Query: 170 KMSEELYQYFVGILDVIKQGIENDEERHVLVNNVLERTKDEELNVVGNQLGCRVVELLLP 349
++ E +YF I ++ EER V+ N LE T+ E + + + V++ LL
Sbjct: 65 EIDPETSKYFSEIANLFDSNEVELEERSVICGNALEETRGREYEIATDYIISHVLQTLLE 124
Query: 350 YASPEDLERFIDALSPELRRLCSDNFTSHVIETLLR 457
+ L FI + + D SHV E+ L+
Sbjct: 125 GCELDQLCSFIRNSASVFPAIAMDRSGSHVAESALK 160
>At1g72320.2 68414.m08361 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile: PF00806 Pumilio-family
RNA binding domains (aka PUM-HD, Pumilio homology
domain) (5 copies)
Length = 731
Score = 38.7 bits (86), Expect = 0.002
Identities = 25/96 (26%), Positives = 42/96 (43%)
Frame = +2
Query: 170 KMSEELYQYFVGILDVIKQGIENDEERHVLVNNVLERTKDEELNVVGNQLGCRVVELLLP 349
++ E +YF I ++ EER V+ N LE T+ E + + + V++ LL
Sbjct: 65 EIDPETSKYFSEIANLFDSNEVELEERSVICGNALEETRGREYEIATDYIISHVLQTLLE 124
Query: 350 YASPEDLERFIDALSPELRRLCSDNFTSHVIETLLR 457
+ L FI + + D SHV E+ L+
Sbjct: 125 GCELDQLCSFIRNSASVFPAIAMDRSGSHVAESALK 160
>At1g72320.1 68414.m08363 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile: PF00806 Pumilio-family
RNA binding domains (aka PUM-HD, Pumilio homology
domain) (5 copies)
Length = 753
Score = 38.7 bits (86), Expect = 0.002
Identities = 25/96 (26%), Positives = 42/96 (43%)
Frame = +2
Query: 170 KMSEELYQYFVGILDVIKQGIENDEERHVLVNNVLERTKDEELNVVGNQLGCRVVELLLP 349
++ E +YF I ++ EER V+ N LE T+ E + + + V++ LL
Sbjct: 87 EIDPETSKYFSEIANLFDSNEVELEERSVICGNALEETRGREYEIATDYIISHVLQTLLE 146
Query: 350 YASPEDLERFIDALSPELRRLCSDNFTSHVIETLLR 457
+ L FI + + D SHV E+ L+
Sbjct: 147 GCELDQLCSFIRNSASVFPAIAMDRSGSHVAESALK 182
>At3g20250.1 68416.m02565 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile: PF00806 Pumilio-family RNA
binding domains (aka PUM-HD, Pumilio homology domain) (8
copies at C-terminus)
Length = 961
Score = 35.9 bits (79), Expect = 0.016
Identities = 21/98 (21%), Positives = 46/98 (46%)
Frame = +2
Query: 161 RGTKMSEELYQYFVGILDVIKQGIENDEERHVLVNNVLERTKDEELNVVGNQLGCRVVEL 340
RG + + Y ++ I + +DEE H +++ +LE + +Q G V +
Sbjct: 774 RGQVATLSTHPYGCRVIQRILEHCSDDEETHCIIDEILE----SAFALAHDQYGNYVTQH 829
Query: 341 LLPYASPEDLERFIDALSPELRRLCSDNFTSHVIETLL 454
+L P++ + I+ L+ + ++ + S+V+E L
Sbjct: 830 VLERGKPDERRQIIEKLTGNVVQMSQHKYASNVVEKCL 867
>At1g35730.1 68414.m04441 pumilio/Puf RNA-binding domain-containing
protein
Length = 564
Score = 31.9 bits (69), Expect = 0.26
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Frame = +2
Query: 236 NDEERHVLVNNVLERTKDEELNVVGNQLGCRVVELLL-PYASPEDLERFIDALSPELRRL 412
+DEE+ L+ +VL E + + N G RVV+ ++ + + + L P L
Sbjct: 310 SDEEQRTLIVSVLTSNPRELIRICLNTYGTRVVQKMIETVKTKQQIALVKSGLKPGFLAL 369
Query: 413 CSDNFTSHVIETLLRVSCLRATEPLQN 493
D +HVI+ SCL+ P N
Sbjct: 370 VKDLNGNHVIQ-----SCLQTLGPNDN 391
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/51 (25%), Positives = 29/51 (56%)
Frame = +2
Query: 311 NQLGCRVVELLLPYASPEDLERFIDALSPELRRLCSDNFTSHVIETLLRVS 463
+Q+GCRV++ L+ + + + + A+ + L D F +++++ L VS
Sbjct: 260 DQIGCRVLQKLVEEGTFHEAKVILLAIIDHVVELSMDPFGNYIVQKLFDVS 310
>At4g08560.1 68417.m01408 pumilio/Puf RNA-binding domain-containing
protein low similarity to RNA binding protein PufA
[Dictyostelium discoideum] GI:5106561; contains Pfam
profile PF00806: Pumilio-family RNA binding repeat
Length = 477
Score = 30.7 bits (66), Expect = 0.60
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 15/113 (13%)
Frame = +2
Query: 173 MSEELYQYFVGILDVIKQGIENDEERHVLVNNVLERTKDEELNVVGNQLGCRVVELLLPY 352
+ ++ Y Y GI + + ++ E H+L V+ + E ++ + + L V EL+L Y
Sbjct: 140 LDDDAYGYMYGIRNTLLSRAKDGIESHML-QYVIAKGLKETIDKIFDNLISHVCELMLDY 198
Query: 353 ------------ASPEDLERFIDAL--SP-ELRRLCSDNFTSHVIETLLRVSC 466
+ E + R +D + P E RLC +H I+ L+R C
Sbjct: 199 YGHKVFRKLMEKCTDEQITRVLDIVLEEPFEFVRLCVHTHGTHAIQGLMRSLC 251
>At1g14850.1 68414.m01776 non-repetitive/WGA-negative nucleoporin
family protein contains Pfam profile: PF03177
non-repetitive/WGA-negative nucleoporin
Length = 1464
Score = 30.7 bits (66), Expect = 0.60
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Frame = +2
Query: 308 GNQLGCRVVELLLPYASPEDLERFIDALSPELRRLCSDNFTSH------VIETLLRVSCL 469
G+Q+ R++ ++ Y + D +D +SP LR C F +E L R +
Sbjct: 841 GDQIATRLISAVMEYYTGSDGRGTVDDISPRLREGCPSYFKESDYKFYLAVERLERAALT 900
Query: 470 RATEPLQNVTAE 505
E +NV E
Sbjct: 901 SDAEEKENVARE 912
>At1g35750.1 68414.m04445 pumilio/Puf RNA-binding domain-containing
protein
Length = 528
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +2
Query: 230 IENDEERHVLVNNVLERTKDEELNVVGNQLGCRVVE-LLLPYASPEDLERFIDALSPELR 406
+ +DEE+ ++ +VL E + + N G RV++ ++ + + + AL P
Sbjct: 272 VVSDEEQRTMIVSVLTSKPRELIKICLNTNGTRVIQKMIKTVKTKQQIALVKSALEPGFL 331
Query: 407 RLCSDNFTSHVIETLL 454
L +D+ HV+++ L
Sbjct: 332 VLVNDSNGYHVLQSCL 347
>At4g39850.1 68417.m05646 peroxisomal ABC transporter (PXA1)
identical to peroxisomal ABC transporter PXA1
GI:15320529 from [Arabidopsis thaliana]; contains Pfam
profile PF00005: ABC transporter;
Length = 1337
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -1
Query: 474 ALRHDTRKRVSITWLVKLSEHNLRN-SGDNASMKRSRSSGEAYGKRSSTTR 325
+LRH T+ R+++ W ++L++H LRN +NA K SG + TR
Sbjct: 819 SLRHLTQ-RLALGWRIRLTQHLLRNYLRNNAFYKVFHMSGNSIDADQRLTR 868
>At4g08840.1 68417.m01453 pumilio/Puf RNA-binding domain-containing
protein contains similarity to RNA binding protein PufA
[Dictyostelium discoideum] gi|5106561|gb|AAD39751
Length = 524
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/62 (20%), Positives = 31/62 (50%)
Frame = +2
Query: 269 VLERTKDEELNVVGNQLGCRVVELLLPYASPEDLERFIDALSPELRRLCSDNFTSHVIET 448
+LE + + + GC V++ + Y+ E E+ +D +S L D F +++++
Sbjct: 386 ILEAATKFCIEIATTRHGCCVLQRCVSYSVGEQHEKLVDEISRNSLLLAQDPFGNYLVQY 445
Query: 449 LL 454
++
Sbjct: 446 II 447
>At1g63820.1 68414.m07222 hypothetical protein
Length = 265
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 93 GNERSARISWRMQKNMRKKVKWDEARKCQRNYTNTL 200
G+E+S R+ + ++K+ A++ QRN+T T+
Sbjct: 177 GDEQSLRVGRYSSEERKEKISKYRAKRTQRNFTKTI 212
>At1g61900.2 68414.m06984 expressed protein contains similarity to
glutamic acid/alanine-rich protein GI:6707830 from
[Trypanosoma congolense]
Length = 413
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 344 LPYASPEDLERFIDALSPELRRLCSDNFTS 433
LP+ +P + +I++ P+L LCS NF++
Sbjct: 46 LPFIAPSPMVPYINSTMPKLSGLCSLNFSA 75
>At1g61900.1 68414.m06983 expressed protein contains similarity to
glutamic acid/alanine-rich protein GI:6707830 from
[Trypanosoma congolense]
Length = 433
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 344 LPYASPEDLERFIDALSPELRRLCSDNFTS 433
LP+ +P + +I++ P+L LCS NF++
Sbjct: 46 LPFIAPSPMVPYINSTMPKLSGLCSLNFSA 75
>At5g27540.1 68418.m03297 GTP-binding protein-related low similarity
to Mig-2-like GTPase Mtl [Drosophila melanogaster]
GI:7271872; contains Pfam profile PF00036: EF hand
Length = 648
Score = 28.3 bits (60), Expect = 3.2
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +2
Query: 281 TKDEELNVVGNQLGCRVVELLLPYAS--PEDLERFIDALSPELRRL 412
++ E+ ++V +L R ++L YA PE LER + PELRRL
Sbjct: 73 SRPEDRDIVAEELK-RADAVVLTYACDRPETLERLSEYWLPELRRL 117
>At4g27340.1 68417.m03923 Met-10+ like family protein ; contains
Pfam profile PF02475: Met-10+ like-protein
Length = 619
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 378 KRSRSSGEAYGKRSSTTRHPS*LPTTFNSSSFVLSRTL 265
+R R E G+R S+ H L TFNS+ ++ R L
Sbjct: 173 RRIRGKAEGDGERLSSVLHRDKLARTFNSTGYLKFRNL 210
>At5g56510.1 68418.m07052 pumilio/Puf RNA-binding domain-containing
protein contains similarity to RNA-binding protein
Length = 596
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +2
Query: 311 NQLGCRVVELLLPYASPEDLERFIDALSPELRRLCSDNFTSHVIETLLRV 460
+Q GCR ++ + D+E + + + L D F +++++ LL V
Sbjct: 288 DQHGCRFLQRIFSEKDGNDIEMIFNEIIDYISELMMDPFGNYLVQKLLEV 337
>At4g25880.2 68417.m03722 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile:PF00806 Pumilio-family RNA
binding domains
Length = 852
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 320 GCRVVELLLPYASPEDLERFIDALSPELRRLCSDNFTSHVIE 445
GCRV++ L P+ R L ++ R D +HVI+
Sbjct: 609 GCRVIQKALDVIEPDQRVRLARELDGQVMRCVRDQNGNHVIQ 650
>At4g25880.1 68417.m03721 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile:PF00806 Pumilio-family RNA
binding domains
Length = 861
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 320 GCRVVELLLPYASPEDLERFIDALSPELRRLCSDNFTSHVIE 445
GCRV++ L P+ R L ++ R D +HVI+
Sbjct: 618 GCRVIQKALDVIEPDQRVRLARELDGQVMRCVRDQNGNHVIQ 659
>At3g10650.1 68416.m01281 expressed protein
Length = 1309
Score = 27.9 bits (59), Expect = 4.2
Identities = 22/79 (27%), Positives = 34/79 (43%)
Frame = -1
Query: 405 RNSGDNASMKRSRSSGEAYGKRSSTTRHPS*LPTTFNSSSFVLSRTLFTRTCLSSSFSMP 226
+NSG +A +K ++S A+G + + T NS+S S T T S FS
Sbjct: 693 QNSGASADIKLEKTSSTAFGVSEAWAKPTESKKTFSNSASGAESSTSAAPTLNGSIFSAG 752
Query: 225 CLITSKIPTKYWYSSSDIF 169
+ P+ +SS F
Sbjct: 753 ANAVTPPPSNGSLTSSPSF 771
>At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 1299
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 426 KLSEHNLRNSGDNASMKRSRSSGEAYG-KRSSTTRHPS*LPTTFNSSS 286
K S+H NS +++ K + S +AYG K+ +T + P N SS
Sbjct: 1219 KPSKHKSANSSGSSNKKENMPSDQAYGNKQHNTVPREAAAPMAKNQSS 1266
>At1g50630.1 68414.m05690 expressed protein
Length = 453
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 156 WDEARKCQRNYTNTLSVS 209
WDE+ +RNYTN L+ S
Sbjct: 130 WDESETVRRNYTNQLNTS 147
>At1g19920.1 68414.m02497 sulfate adenylyltransferase 2 /
ATP-sulfurylase 2 (ASA1) (MET3-1) (APS2) identical to
ATP sulfurylase (APS2) [Arabidopsis thaliana] GI:1575324
Length = 476
Score = 27.9 bits (59), Expect = 4.2
Identities = 22/55 (40%), Positives = 27/55 (49%)
Frame = -2
Query: 170 SCLVPFDLFSHIFLHSPRNSCASFVSFSNLDLFLNHLHSSCVTNIFSLVYNTNTT 6
S ++ SHI L PRNS S SF+N FL+ SS +LVY N T
Sbjct: 2 SLMIRSSYVSHITLFQPRNSKPS--SFTNQISFLS---SSNNNPFLNLVYKRNLT 51
>At5g05570.1 68418.m00605 transducin family protein / WD-40 repeat
family protein similar to unknown protein (pir||T04661);
contains Pfam PF00400: WD domain, G-beta repeat (4
copies, 2 weak)|8683726|gb|AV524198.1|AV524198
Length = 1124
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 188 IVPLTFSCLVPFDLFSHIFLHSPRNSCASFVSFSNLDLFL 69
I P CL+ DL HI HS S AS ++F + L
Sbjct: 20 IAPPPRGCLMAEDLDPHIITHSGIPSTASLLAFDPIQCLL 59
>At4g17680.1 68417.m02641 expressed protein
Length = 314
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 362 EDLERFIDALSPELRRLCSDNFTSHVIETL 451
++L+RFI ELRR +DN +E L
Sbjct: 131 DELDRFIQTQGEELRRTLADNRERRYVELL 160
>At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containing
protein similar to RNA binding protein PufA GB:AAD39751
[Dictyostelium discoideum] and similar to Pumilio protein
GB:A46221 [Drosophila sp.]
Length = 1003
Score = 27.1 bits (57), Expect = 7.4
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +2
Query: 242 EERHVLVNNVLERTKDEE--LNVVGNQLGCRVVELLLPYASPEDLERFIDALSPELRRLC 415
EER VLVN +L T + E ++ + G VV+ +L + L + + L L
Sbjct: 909 EERQVLVNEMLGYTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLALILSRIKVHLNALK 968
Query: 416 SDNFTSHVI 442
+ H++
Sbjct: 969 RYTYGKHIV 977
>At5g09610.1 68418.m01112 pumilio/Puf RNA-binding domain-containing
protein contains Pfam profile: PF00806: Pumilio-family
RNA binding domains (aka PUM-HD, Pumilio homology
domain)
Length = 517
Score = 26.6 bits (56), Expect = 9.8
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = +2
Query: 254 VLVNNVLERTKDEELNVVGNQLGCRVVELLLP--YASPEDLERFIDALSPELRRLCSDNF 427
V + ER + + + G VVE L +A + LE F + E R+ +D F
Sbjct: 393 VATTAIAERLRGSFFRLAMERQGSYVVEKCLKSDFARDQVLEEF-RGNAKEWVRMTTDKF 451
Query: 428 TSHVIETLLRVSCLRATEPL 487
+ V+++ LRV + PL
Sbjct: 452 GNFVVQSALRVMKEKEMRPL 471
>At4g01700.1 68417.m00221 chitinase, putative similar to peanut type
II chitinase GI:1237025 from [Arachis hypogaea]
Length = 280
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2
Query: 182 PLTFSCLVPFDLFSHIFLHSPRNSC 108
P LVP L+ IF+H N+C
Sbjct: 35 PAPIMSLVPRTLYDQIFIHKDNNAC 59
>At1g79890.1 68414.m09334 helicase-related similar to CHL1 potential
helicase protein (GI:2632247) [Homo sapiens]; similar to
helicase GB:AAB06962 [Homo sapiens]
Length = 882
Score = 26.6 bits (56), Expect = 9.8
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +2
Query: 206 ILDVIKQGIENDEERHVLVNNVLERTKDEELNVVGNQLGCRVVELLLPYASPEDLE 373
+L K+ IE+ ER ++ V+ E +N + C VV + LPY SP D+E
Sbjct: 690 VLRDYKEAIES--ERGAIMLAVVGGKVSEGINFSDSMCRC-VVMVGLPYPSPSDIE 742
>At1g70350.1 68414.m08093 expressed protein
Length = 105
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 405 RNSGDNASMKRSRSSGEAYGKRSSTTRHPS*LPTTFNSSSFVLS 274
R+S ++ K +S+G A+G SS++ PS TF+ LS
Sbjct: 23 RSSAATSASKIGKSAGIAFGNGSSSSTRPSLRRLTFSRVPVELS 66
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,168,989
Number of Sequences: 28952
Number of extensions: 232244
Number of successful extensions: 770
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -