Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_I02
         (306 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    26   1.4  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   2.5  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    25   2.5  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    24   4.4  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    24   5.8  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    23   7.7  

>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 23  VRIYQRNHVHRDPIL 67
           + IYQ+NHVH  P L
Sbjct: 443 ISIYQKNHVHDSPAL 457


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +1

Query: 1   RPYPVSRSPNLPKEPRSPRSNSLSRVAHVSPF 96
           +P P  ++ +LP+   SPRS++ +R+A +S F
Sbjct: 669 KPTP-KKAASLPQFWLSPRSHNTARLASISSF 699


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 1   RPYPVSRSPNLPKEPRSPRSNSLSRVAH 84
           RP+  S +P +PK      S S+S  +H
Sbjct: 90  RPFTASSNPRMPKSAHPISSRSVSASSH 117


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 40  EPRSPRSNSLSRVAHVSPFKFP 105
           EP++PR N +      SP  FP
Sbjct: 290 EPQTPRKNKIRDSLQSSPLNFP 311


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 22  SPNLPKEPRSPRSNSLSRVAHVSPFKFP 105
           SPN P  P + +SNS      VSP   P
Sbjct: 508 SPNAPHPPINEQSNSSQPFYRVSPSIVP 535


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 32  YQRNHVHRDPILYQELLMY 88
           +  +H H  PILY + LM+
Sbjct: 697 FYNSHTHGFPILYPQFLMH 715


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,179,525
Number of Sequences: 5004
Number of extensions: 19642
Number of successful extensions: 54
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)